Gene BBta_0602 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_0602 
Symbol 
ID5149155 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp605458 
End bp607911 
Gene Length2454 bp 
Protein Length817 aa 
Translation table11 
GC content62% 
IMG OID640555609 
Producthypothetical protein 
Protein accessionYP_001236781 
Protein GI148252196 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.141077 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCACGCA GGCGGCGCAA ATCGACTCAT CAGCCAGTGG CGAATTTCCC TGCGAGATCG 
CCAGAGGCAT CGTTGCGGGA ACCAGAGCCA CGACGATGGA ACTCGGGATT CTCTGGACTT
TTCTGGGCGG CCAGCTTGAT GGCAACGACT GCCATTCTGG CTTGGATTGC CTTTCTCTCG
CTCGAGAACA AGGCTTCGCC GGCCCCTGAG ATTGCTACCT ATGTCGGCAG CAACGCCTGC
GCTGGCTGTC ACCAGACGGA GGCACGGCTG TGGATGGCGT CTCAGCACAA GGGGGCAATG
CAGCACGCCA CCGACGGGAC GGTGCTCGGC AATTTCAACG ACGTGCGTTT TGACTATTTC
GGTGTGCAGT CCCGCTTCTT CCGTAAGAAT GGACAGTTTT TCGTGGAGAC CGATGGTCCC
GACGGAGCGC TGGCCGTCTA CGAAGTGAAA TATACCTTCG GCGTCGATCC GCTGCAGCAG
TATCTCGTTC CGTTCCCGGA CGGCCGCCTC CAGGTCCTGC CGATTGCATG GGACAGCCGA
CCTAGTGATA GAGGTGGCCA GCGATGGTTT CATCTCTCGG CAAATGAAGC GATCAGGCAC
GATGATGTTC TGCACTGGAC CAGATTGAAC CAGACCTGGA ACTTCATGTG CGCGGAATGC
CATTCCACTG GTGTGCGCAA GAACTACGAT GCGGAGAAGG ATCGGTTCGC GACGACGTGG
ACGGAGATCA GTGTGGGCTG TGAGGCATGT CATGGACAGG GCTCGCGCCA CGTCAGTTGG
GCGCACGAGC AGCAGAGCTG GTTGCCGTTT GGCAGGCGCC AGGACTCGAG CAAGGGATTG
CTGGTGCATC TTGATGAGCG CAACGGCATC ACTTGGTCAA TCGAGCCTCA GACAGGCAAC
GTGCAGCGCT CTTCCGAGCC CGCAGCCCTC CGCAAAGAGG TCGAGACTTG CGGCCTATGT
CACGCGCGTC GGGCGGCCTT TCATGAAGGC TGGATTCCCG GACATTCATT ATCGGAGACC
CATGCGGTCG AAGCGCTCTC GCGCAACACG TTCGATGTCG ACGGACAGAT CCGCGATGTC
GAGGAGCCGT ATAACTACAC ACCCTTCAGG CAAAGCAAGA TGTATGCGGC CGGCGTCAGC
TGCAGCGATT GCCATGAGCC GCACAGCGGA GGGCTTCGCC TCTCAGGCGA AGGTACATGC
CTGCAATGTC ACGCATCGAA CAAATACGCT GATGTGAAGC ATCGCCAGCA TGCGGGCGTC
GACCCCGCGC CGACCTGCAT CTCGTGCCAC ATGCCGACCC GGACCTACAT GTCGATCGAT
GCCAGACACG ATCACGCGTT CAGGGTTCCT CGACCCGATC AATCTGTGGC CTTGGGAACG
GCGAACGCCT GCAACGACTG CCATCGCGAT CAGTCGGCAC AATGGGCCGC AGCGGCGATT
GAGCGATGGT ACGGAGCTGA TCGCAAGGGC TTTCAAAGTT ACGGACCGAT ATTTCATGCC
GCCCGGATCA ACCGCACAGA CGCGGCGGCG CTTCTTTCGG AGCTGGCCTC GGATCGCCGC
GCGCCGGCCG TAGCGCGTGC CAGTGCGCTT GGCGAATTGG CATCTCGCAT GACGCGAGCG
GACATTTCAA CGGCCCGCGC CGCGCTTGGT GATCCCGATC CTATGGTGCG GCTCGGCGCG
CTGGACATGC TGGAAAACGT GCCCGCCGCT GAGATCTGGT CGTTCGTGTC TCCGCTTTTG
TCCGATCCCA GCCGCGGCGT TCGCATCAGA GCCGTTGCTC TGCTGGCCAA TATGCCAGTC
CGAAGTCAGC AGCCGGCGGA TCGTGCACGC TTCGATCTGG CGGCGGCTGA GTTCATCGCA
GCCCAGCGCT CCAACGCGGA GCGGCCGGAG GCTCGGACCG CTCTTGGGAA TTTTTTGTTG
CAGCGCGACC GACCGCAAGA GGCCGAGGCC GAATACCGGG CCGCACTGAG GCTAAGCCCG
CATTACGCGA CGGCCGCAAT CAACCTTGCC GACCTCTATC GGCAGCGCGG CCAGGACGGC
GAAGGTGAAG CGGTCCTGCG CACAGCGCTC GTGGCGTCGC CGCGCGACGC CGCGCTTTTT
TACTCCCTTG GCCTGACATT GACACGCCTC AGACGGCCGG ACGATGCACT CAACGCGTTG
GCTCGCGCAG CGGAACTGGA GCCGGAGCGT CAACGTTATG TTTACGTCTA CGGCATCGCT
CTGCATTCCA GCGGTCGCCG TGAGGCGGCG GTGAGTGTTC TGAAGGACGC CTTGCGCGCC
CATCCAAACG ATAGTCAGAT TTTGCAGGCG CTCATCTCCT TCAGTCGGAT GTCTGGGGAC
GCGACGTCGG CGCTCCGCTA TGCCGAGCAG CTTGCTGCGA TTGCGCCGAG CGATAAGGAG
CTGGCAGCGC TTATTCAGGA ACTCCGTCGC ATCGCGTCTC CGCCCGCAAG ATAG
 
Protein sequence
MARRRRKSTH QPVANFPARS PEASLREPEP RRWNSGFSGL FWAASLMATT AILAWIAFLS 
LENKASPAPE IATYVGSNAC AGCHQTEARL WMASQHKGAM QHATDGTVLG NFNDVRFDYF
GVQSRFFRKN GQFFVETDGP DGALAVYEVK YTFGVDPLQQ YLVPFPDGRL QVLPIAWDSR
PSDRGGQRWF HLSANEAIRH DDVLHWTRLN QTWNFMCAEC HSTGVRKNYD AEKDRFATTW
TEISVGCEAC HGQGSRHVSW AHEQQSWLPF GRRQDSSKGL LVHLDERNGI TWSIEPQTGN
VQRSSEPAAL RKEVETCGLC HARRAAFHEG WIPGHSLSET HAVEALSRNT FDVDGQIRDV
EEPYNYTPFR QSKMYAAGVS CSDCHEPHSG GLRLSGEGTC LQCHASNKYA DVKHRQHAGV
DPAPTCISCH MPTRTYMSID ARHDHAFRVP RPDQSVALGT ANACNDCHRD QSAQWAAAAI
ERWYGADRKG FQSYGPIFHA ARINRTDAAA LLSELASDRR APAVARASAL GELASRMTRA
DISTARAALG DPDPMVRLGA LDMLENVPAA EIWSFVSPLL SDPSRGVRIR AVALLANMPV
RSQQPADRAR FDLAAAEFIA AQRSNAERPE ARTALGNFLL QRDRPQEAEA EYRAALRLSP
HYATAAINLA DLYRQRGQDG EGEAVLRTAL VASPRDAALF YSLGLTLTRL RRPDDALNAL
ARAAELEPER QRYVYVYGIA LHSSGRREAA VSVLKDALRA HPNDSQILQA LISFSRMSGD
ATSALRYAEQ LAAIAPSDKE LAALIQELRR IASPPAR