| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0570 |
|---|
| Symbol | hpd |
|---|
| ID | 5154636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 573876 |
|---|
| End bp | 574994 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640555581 |
|---|
| Product | 4-hydroxyphenylpyruvate dioxygenase |
|---|
| Protein accession | YP_001236754 |
|---|
| Protein GI | 148252169 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
|---|
| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.150447 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTCCGT TTCCGCACGA TGCGCCGCCT GCCACCCTCT CTGCCGACAA TCCGATGGGC
ACCGACGGCT TCGAGTTTGT CGAATACGCC CATCCCGATG CGGCTCAGCT GCACGCGCTG
TTCAAGCTGA TGGGCTTCGC TCCGGTCGCC CGCCACAAGA CCAAGGCGAT CACGGTCTAC
CGCCAGGGCG ACATCAACTA TCTCGTCAAC GAGGAGCCCG GCAGCCACGG CCACGACTTC
GTCGCCGCGC ACGGTCCCTG CGCACCGTCG ATGGCGTTCC GCGTGGTCGA TGCGAAGAAA
GCCTATGCGC GGGCGGTCGC GCTCGGGGCT GAGCCGGCGG ATCTGCAGCC TTCGCAGAAG
GCGCTCGACG TTCCCGCGAT CAAGGGGATC GGCGGCAGCG TGCTGTATCT GGTCGACCGC
TACGGCGCCA AGGGCTCGGC CTATGATCTC GAATTCGACT GGCTCGGGGC CCGCGATCCG
CGGCCGGCGG GCTCGGGCCT CTATTACATC GACCATCTGA CTCACAACGT GCGTCGCGGC
CGCATGAATG TGTGGACCGG CTTCTATGAG AGACTGTTCA ACTTCCGGCA GATCCGCTTC
TTCGACATCG AGGGTCGCGC CTCCGGCCTG TTCTCGCGTG CGTTGACCAG CCCTGACGGC
AAGATCCGCA TCCCGATCAA CGAGGACGCG GGCGACTCCG GCCAGATCGA GGAATATCTG
AAGGTCTATC GCGGCGAGGG CATCCAGCAC ATCGCCTGCG GCGCCCGCGA CATCTACGCC
ACGGTCGAAG GCCTGCGCGC GTCAGGCCTG CCGTTCATGC CGTCGCCGCC CGACACCTAT
TTCGAGCGGA TCGATGCGCG ACTGCCCGGC CATGGCGAAG ACATCGCGCG GCTGAAGACG
AACGGCATCC TGATCGACGG CGAAGGCGTC GTCGATGGTG GCCACACCAA GGTGCTCTTG
CAGATCTTCT CGGCCAACGC GATCGGGCCG ATCTTCTTCG AGTTCATCCA GCGCAAGGGC
GACGACGGCT TTGGCGAAGG CAACTTCAAG GCGCTGTTCG AGTCGATCGA GGAGGACCAG
ATCCGTCGCG GTGTGCTGAA GGTGGAGGCG GCGGAGTAG
|
|---|
| Protein sequence | MGPFPHDAPP ATLSADNPMG TDGFEFVEYA HPDAAQLHAL FKLMGFAPVA RHKTKAITVY
RQGDINYLVN EEPGSHGHDF VAAHGPCAPS MAFRVVDAKK AYARAVALGA EPADLQPSQK
ALDVPAIKGI GGSVLYLVDR YGAKGSAYDL EFDWLGARDP RPAGSGLYYI DHLTHNVRRG
RMNVWTGFYE RLFNFRQIRF FDIEGRASGL FSRALTSPDG KIRIPINEDA GDSGQIEEYL
KVYRGEGIQH IACGARDIYA TVEGLRASGL PFMPSPPDTY FERIDARLPG HGEDIARLKT
NGILIDGEGV VDGGHTKVLL QIFSANAIGP IFFEFIQRKG DDGFGEGNFK ALFESIEEDQ
IRRGVLKVEA AE
|
|---|
| |