Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_0557 |
Symbol | |
ID | 5156007 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 555585 |
End bp | 558725 |
Gene Length | 3141 bp |
Protein Length | 1046 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640555568 |
Product | AcrB/AcrD/AcrF family mulitdrug efflux protein |
Protein accession | YP_001236741 |
Protein GI | 148252156 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.644093 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.291985 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACTGA ATATCTCGGC ATGGTCGATC CGGAACCCGC TGCCGTCGAT CCTCTTCTCG CTCATTCTCC TGATTCTTGG CTGGATGAGC TTCAGCAAGC TCGCGGTGAC GCGGCTGCCG AACGCCGACA TTCCGGTGAT CTCGGTCGCG GTGGCGCAGT TCGGCGCGGC GCCGTCGGAG CTTGAATCCC AGGTCACCAA GATCATCGAG GACGGCGTGT CCGGCGTCGA GGGCGCGCGC CACATCCAGT CCCTGATCAC CGACGGCCTC TCGGTCACGA CGATTACGTT CGCGCTCGAG ACCAACACGG ATCGCGCCAT CAACGACGTC AAGGACGCCG TGACTCGGGT GCGCTCCGAC CTGCCGCAGA ACGTCACCGA GCCGTTGATC TCGCGCGTCG ACAAGATCGG TTTGCCGATC GTGACTTATG CGGCGATCTC GCCAGGCAAG ACGCCGGAGC AACTGTCCTT CTTCGTCGAC GATGTGGTCA AGCGCGAGCT GCAGGGCGTC CGCGGCGTCA GCCAGGTCGA GCGCATCGGC GGCGTCGAAC GCGAAATCCT GGTCTCGCTC GATCCCGACC GTCTGCAGGC CATGGGCCTC ACGGCGGTGA ATGTCAGCCA GAGCCTGCGC GGCACCAATG TCGACGTCGC CGGCGGCCGG GCCGAGATCG GCAAGAACGA TCAGGCGATC CGCACGCTTG CCGGGGCCAA GACGCTGAAC GAGCTGTCGA ACACGATGAT CCCGCTGTTC GGCGGCGGCG AGGTGCGGCT CGCCGATCTC GGCACCGTCA CCGACACGAT CGCCGATCGC CGCACCTTCG CGCGCTTCAA CGGCGAGCCG GTGGTGGCGC TGGGCATCAA GCGCGCCAAA GGCGCCAGCG ACGTGGTCGT CGCTGCGGCC GTGCAGAAGC GCATCGACGA GGTGAAGGCC GCGCATCCCG ACGTCGATCT CAGGCTGATC GATACCTCGG TCGAATTCAC CAAGGGCAAT TACGAGGCTG CGATCTCGAC CCTGTTCGAG GGCGCGATTC TTGCCGTCAT CATCGTGCTG CTGTTCCTGC GGGACTTCAG GGCGACGGTC ATCGCGGCGA TCTCGCTGCC GCTGTCGATC TTCCCGGCCT TCTGGGCGAT GGATATCCTC GGCTTCTCGC TGAACATGGT CTCGTTCCTG GCGATCACGC TGTCGACCGG CATTCTGGTC GACGACGCGA TCGTCGAGAT CGAGAACATC GTGCGCCATA TGCGGATGGG CAAGTCGCCC TATCGCGCGG CGCTGGATGC CGCGGACGAG ATCGGTCTCG CGGTGATCGC GATCAGCCTC ACCATCATTG CGATCTTTGC GCCCGCAAGC TTCATGTCGG GGATTGCCGG CCAGTTCTTC AAGCAGTTCG GCATTACCGT CTCGGTGCAG GTGTTCTTCT CGCTGCTCGC CGCGCGGTTC GTCACGCCGA TGCTGGCGGC CTACTTCATG AAGCATCACG ATCACGAGGA TCCGCCGCCG GGCTTCATCC TGCGCGCCTA TCAGCGCATC GTGACCTGGT CGGTGCAACA CTACTTCGTG ACGGTGCTGC TCGGCATCGG CATCTTCGCT GCCTCGATCT GGAGCACGAC CCTGCTGTCG CAAGGGTTCC TGCCGGCGCA GGACGCGGCG CGATCGCTGC TCGCAATCGA GCTGCCGCCC GGCGCGCAAC TCGCCTACAC CGAGAAGGTC ACCGAGGAGA TCGTGGCGCG GCTGCGCAAG CGGCCCGAGG TGCGCAGCGT CTTTGTCGAC GGCGGCAGGC TGCAGGGGGC GATGGAGGTT CGCCGCGCCG GCATGATCGT CAACTACACC CCGAAGACCG AGCGCAAGAT CACCCAGAAG GAGCTCGAAC TCGCGATCAC CAAGGATCTC GAGACCATCC CCGACATCCG CTTCTGGTTC ACGGATGAGA ACGGTCTGCG ACCGATCAAG CTGGTGCTGA CGGGGTCTGA CCCCAAGCTG GTCGACAATG TCGCCAGCGA ACTTGCGTCG CAGATGAAGC GGATCCCGAT CATCTCCAAC GTGGTGTCCG ACACGTCGCT CGACCGGCCG GAATTGCGGG TGCAGCCGCG CGCCGATCTG GCCGCGCGCC TCGGCGTGTC GACTGAGAGT TTGTCGCAGA CGATTCGCGT CGCGACGATC GGCGATGTCG GGCCTGCGCT GGCGAAATAT GATGCGGGCG GCCGCCTGGT CCCGATCCGG GTCCAGCTCG AGGATGCCGC GCGGGGCGAT GTGAAGATCC TCGAACAGCT GCGCGTGCCG CTCGGCCAGT ATGGTGAGAA GGGTGGCGTG CCGCTGGCGG TGGTCGCCGA CATCAAGCTC GATCAGGGCC CGACCAGCAT CAGCCGTTAC GATCGCGGCC GGCAGGCCAC GGTCTCGGCT GATCTCGTCG GGCTGGCGGC GCTCGGCGAT GCGACCAAGC AGATCGACGA CCTGCCGGTC CGGAAAAGCA TGCCGGCGAG CGTCAAGCTG ATCCCGTCGG ACGATGCCGA GAGCCTGAAC GAGCTGGCGT CCGGCTTCAT CACGGCGATC ACGGCGGGGC TGATGATCGT CTATGCGGTG CTGGTGCTGC TGTTCGGCAC CTTCCTGCAG CCGATCACGA TCCTGTTCTC GTTGCCGCTG TCGATCGGCG GCGCCATCGG CGCCTTGATG CTGACCGGCA AGCAGCTCAC GATCCCGGTC TATATCGGCA TGATGATGCT GATGGGCATC GTCACCAAGA ACGCGATCAT GCTGGTCGAG TTCGCCGTCG AGGCGATCCA TGCCGGCACC AGACGCGACG AGGCGATCAT CGATGCCGGC ATGAAGCGGG CCCGTCCGAT CGTCATGACC ACGATCGCGA TGGTCGCGGG CATGATGCCG AGCGCGCTCG CGGTCGGCGC GGGCGGCGAA TTCCGTTCGC CCATGGCGCT GGCCGTGATC GGCGGGCTGG TGTTCTCGAC AGTCCTGTCG CTTCTGTTTG TGCCTGCGAT GTTCCTGGTG ATGGACGATC TCAGCACGCT GTTCGGACGG CTCGGCCGCC GGCTGATCGT GTCTGACGGA ACGGACGAGC CGGGCCACGA CGCGGAGGGC GGACACGCCC AGAGGCCGCG GCCCTCGGTA GTGTCGCCGG CGGCGGAGTG A
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Protein sequence | MALNISAWSI RNPLPSILFS LILLILGWMS FSKLAVTRLP NADIPVISVA VAQFGAAPSE LESQVTKIIE DGVSGVEGAR HIQSLITDGL SVTTITFALE TNTDRAINDV KDAVTRVRSD LPQNVTEPLI SRVDKIGLPI VTYAAISPGK TPEQLSFFVD DVVKRELQGV RGVSQVERIG GVEREILVSL DPDRLQAMGL TAVNVSQSLR GTNVDVAGGR AEIGKNDQAI RTLAGAKTLN ELSNTMIPLF GGGEVRLADL GTVTDTIADR RTFARFNGEP VVALGIKRAK GASDVVVAAA VQKRIDEVKA AHPDVDLRLI DTSVEFTKGN YEAAISTLFE GAILAVIIVL LFLRDFRATV IAAISLPLSI FPAFWAMDIL GFSLNMVSFL AITLSTGILV DDAIVEIENI VRHMRMGKSP YRAALDAADE IGLAVIAISL TIIAIFAPAS FMSGIAGQFF KQFGITVSVQ VFFSLLAARF VTPMLAAYFM KHHDHEDPPP GFILRAYQRI VTWSVQHYFV TVLLGIGIFA ASIWSTTLLS QGFLPAQDAA RSLLAIELPP GAQLAYTEKV TEEIVARLRK RPEVRSVFVD GGRLQGAMEV RRAGMIVNYT PKTERKITQK ELELAITKDL ETIPDIRFWF TDENGLRPIK LVLTGSDPKL VDNVASELAS QMKRIPIISN VVSDTSLDRP ELRVQPRADL AARLGVSTES LSQTIRVATI GDVGPALAKY DAGGRLVPIR VQLEDAARGD VKILEQLRVP LGQYGEKGGV PLAVVADIKL DQGPTSISRY DRGRQATVSA DLVGLAALGD ATKQIDDLPV RKSMPASVKL IPSDDAESLN ELASGFITAI TAGLMIVYAV LVLLFGTFLQ PITILFSLPL SIGGAIGALM LTGKQLTIPV YIGMMMLMGI VTKNAIMLVE FAVEAIHAGT RRDEAIIDAG MKRARPIVMT TIAMVAGMMP SALAVGAGGE FRSPMALAVI GGLVFSTVLS LLFVPAMFLV MDDLSTLFGR LGRRLIVSDG TDEPGHDAEG GHAQRPRPSV VSPAAE
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