| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0538 |
|---|
| Symbol | |
|---|
| ID | 5156287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 533442 |
|---|
| End bp | 534305 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640555552 |
|---|
| Product | putative ABC transporter (permease protein) |
|---|
| Protein accession | YP_001236725 |
|---|
| Protein GI | 148252140 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.109267 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACG CCAAGATCAT CCTGCGCGAT ACGTCGACGC CGAGTGCGGC GTCGGCTGCC
GATGTCGCGC GCAAGCTGAG CGTGTTCGAG CTGCTGTGGA ACGACGGCTT CGTGCGCAAG
AGCCTGATCA TCGTCGTGCT CGCCGCGATC TGGCAGGCCT ATGGCAGCTA TCTCGACAAT
CCCCTGCTGT TCCCGACCTT CTCCGACACC ATCGCCGCAC TGTGGGAGAA GGTCCGCGAC
GGCACCATCC CGATGCGCGC CTGGACCTCG CTGAAGGTGC TCTTCATGGG CTATGCCGCC
GGCATCGCCC TGGCGGCGAT CCTGACGGTG CTGGCGATCT CGACCCGCAT CGGCACCGAC
TTCCTCGAAA CCGTCACCGC CATGTTCAAT CCGCTGCCGG CGATCGCGCT GCTGCCGCTG
GCCTTGATCT GGTTCGGGCT CGGCAGCGGC AGCCTCGTGT TCGTGCTGAT CCATTCGGTG
CTGTGGCCGG TCGCGCTCAA CACCCATTCG GGCTTCAAGA GCGTCTCGAA CACGCTGCGC
ATGGTCGGCC GCAATTACGG CCTGACAGGT TTCTCCTACG TGATCCGCAT CCTGATTCCG
GCAGGGTTCG GCGCCATCCT CACCGGCCTC AAGATTGGCT GGGCCTTCGC CTGGCGCACT
TTGATCGCGG CTGAATTGGT GTTCGGTGTC TCATCGGGGC AGGGCGGCCT CGGCTGGTTC
ATCTTCGAGA ACCGCAACCT GCTCGAAATT CCCGCCGTGT TCGCCGGACT TCTCACCGTG
ATCCTGATCG GTCTCGTGGT CGAGAACCTG ATCTTCCGGA CCATCGAGCG CAAGACCGTG
CTGACCTGGG GCACCCAATC ATGA
|
|---|
| Protein sequence | MADAKIILRD TSTPSAASAA DVARKLSVFE LLWNDGFVRK SLIIVVLAAI WQAYGSYLDN
PLLFPTFSDT IAALWEKVRD GTIPMRAWTS LKVLFMGYAA GIALAAILTV LAISTRIGTD
FLETVTAMFN PLPAIALLPL ALIWFGLGSG SLVFVLIHSV LWPVALNTHS GFKSVSNTLR
MVGRNYGLTG FSYVIRILIP AGFGAILTGL KIGWAFAWRT LIAAELVFGV SSGQGGLGWF
IFENRNLLEI PAVFAGLLTV ILIGLVVENL IFRTIERKTV LTWGTQS
|
|---|
| |