Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_0398 |
Symbol | lpd |
ID | 5154512 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 400760 |
End bp | 402163 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640555417 |
Product | dihydrolipoamide dehydrogenase |
Protein accession | YP_001236591 |
Protein GI | 148252006 |
COG category | [C] Energy production and conversion |
COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.175439 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTAACT ACGATCTCGT CGTCATCGGC ACCGGACCCG GTGGTTATGT TTGCGCCATC CGCGCGGCGC AGCTCGGCAT GAAGGTGGCC GTGGTCGAGA AGAACGCCAC CCTCGGCGGC ACCTGCCTCA ATGTCGGCTG CATGCCCTCG AAGGCGCTGC TGCATGCCTC TGAATTGTTC GAGGAGGCCG GGCATTCCTT CGCCAAGATG GGCATCAAGG TGCCGGCGCC GGAGATCGAC CTGCCGGCGA TGATGAACTT CAAGCAGCAG GGCATCGACG GCAACGTCAA GGGCGTCGAG TTCCTGATGA AGAAGAACAA GATCGACGTG CTCCAGGGCA AGGGCAAGAT CCTCGGCACC GGCAAGGTGC AGGTGACCGG CAATGACGGC ACCGCGCAGA CCGTCGAGAC CAAGAACATC GTGATCGCCA CCGGCTCCGA CATCGCGCGC CTCAAGGGCA TCGAGATCGA CGAGAAGCGC ATCGTTTCCT CGACCGGCGC GCTGTCGCTG GACAAGATTC CGTCGAGCCT GCTCGTCGTC GGTGCTGGCG TGATCGGGCT CGAGCTCGGC TCGGTGTGGC GCCGCCTCGG CGCCAAGGTC ACCGTGGTTG AATTCCTCGA CCGTATCCTG CCCGGCATGG ACCTCGAGAT CGCCAAGCAG TTCCAGCGCA TCCTCGAGAA GCAGGGCTTT GCGTTCAAGC TCGGCGCCAA GGTGACCGGT GTCGACACGT CAGGGGCAAC GCTCGCCGCG ACGATCGAGC CGGCGGCCGG CGGCGCGGCT GAGAAGATCG AGGCCGACGT GGTCCTCGTC GCGATCGGCC GCGTGCCGTA CACCGACGGC CTCGGCCTGC AGGAGGCTGG CGTCGTGCTC GACAATCGCG GCCGCGTGCA GATCGATCAC CATTTCGCGA CCAGCGTGCC CGGTGTCTAC GCGATTGGCG ATGTCGTCGC CGGTCCGATG CTCGCGCACA AGGCCGAGGA TGAGGGCGTG GCGGTGGCCG AGATCCTGGC CGGCCAGGCC GGTCATGTGA ACTACGACGT GATTCCGGGC GTCGTCTACA CCACGCCGGA AGTGGCCTCC GTCGGCAAGA CGGAAGACGA GCTCAAGCAG GCCGGTGTTG CGTACACCGT CGGTAAGTTT CCGTTTACCG CGAACGGCCG CTCCAAGGTC AACCAGACCA CTGACGGTTT CGTGAAGATC CTTGCAGATG CGAAGACCGA TCGCGTGCTC GGCGCGCACA TCATCGGCCG CGAGGCCGGT GAACTGATCC ACGAAGCCGC CGTATTGATG GAGTTCGGTG GCTCTGCCGA GGATCTGGCG CGCACCTGCC ACGCCCATCC GACGCGGTCG GAGGCCGTCA AGGAAGCCGC TCTTGCGGTC GGCAAGCGTG CCATCCACAT GTGA
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Protein sequence | MANYDLVVIG TGPGGYVCAI RAAQLGMKVA VVEKNATLGG TCLNVGCMPS KALLHASELF EEAGHSFAKM GIKVPAPEID LPAMMNFKQQ GIDGNVKGVE FLMKKNKIDV LQGKGKILGT GKVQVTGNDG TAQTVETKNI VIATGSDIAR LKGIEIDEKR IVSSTGALSL DKIPSSLLVV GAGVIGLELG SVWRRLGAKV TVVEFLDRIL PGMDLEIAKQ FQRILEKQGF AFKLGAKVTG VDTSGATLAA TIEPAAGGAA EKIEADVVLV AIGRVPYTDG LGLQEAGVVL DNRGRVQIDH HFATSVPGVY AIGDVVAGPM LAHKAEDEGV AVAEILAGQA GHVNYDVIPG VVYTTPEVAS VGKTEDELKQ AGVAYTVGKF PFTANGRSKV NQTTDGFVKI LADAKTDRVL GAHIIGREAG ELIHEAAVLM EFGGSAEDLA RTCHAHPTRS EAVKEAALAV GKRAIHM
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