Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_0172 |
Symbol | |
ID | 5150376 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 178850 |
End bp | 179836 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640555197 |
Product | GGDEF domain-containing protein |
Protein accession | YP_001236375 |
Protein GI | 148251790 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCAGC AGCGCGTGCC CCCCACGCCT AACAACTTCC ATTTGTGGTT CAAGTACTCG CTGGGATCGG CGTCGGACCT GAAGCGTGCC GTCGACATTC TTGTCAGCAA CAAGCGGAAG TTCGACAAGA CCACAAACCA GGCGCTGTTC GACACCTATA TCGGCCAGCA GGGAACGGAA GCGGCTGTCG TCCATAAAGT CTCGCAACAG CTGCATGGCG TGATGGACTC CGCCAAGAGC TATCTGACCG CCGCCATCGC CGACAACCGC ACGCATATGG CGGCGATCGA CGGCGTCGCC GAGCGCAGCG AGCAGGGTGT CGATCCGAAG ATCCTGATCG AGAATCTCGT CAGCGAACTC GCCCAGGCCA CCGCGCGGGC GGCCAAGCTC GAAGCGAGCT TCGCCGAGAA GTCGCGCGAG CTCGACACGA TCAGAGACTC GCTCAACAAA TCGGAGCAGC GCGCGCGCAC CGATACGCTG ACTGGTCTGC CAAATCGCCG CGCGCTCGAG GAATTCTTCC GTCACGCCCA GATCGAGTCG ATGGAGAGGG ACGAGCCGCT CAGCATCCTG CTGATCGACG TCGATCACTT CAAGAAGTTC AATGACAATT ACGGTCACGG TGTCGGTGAT CAGGTGCTGC GCCTGGTGGC CAAGGCACTG CGCGAGCGGG TCCGCGACCA GGATCTTCCG GCACGCTATG GTGGCGAGGA GCTGATCGCA GTGCTGCCGC AGACCGATCT CGAAGGCTGC CATGCCATTG CGGAACGGAT CCGGCGCACG ATCGCGGATT GTCAGTTCAC CCGGCGTTCA ACCGGCGAGG TGCTGCCCCA GATCACCGTG TCGATCGGCG TGGGCCAGTT CCAGTTCGGC GAATCGATGG CCGATCTGAT CGACCGCTGC GACCGCGCCC TCTATCTCGC CAAGAAGCTC GGCCGCAACC GCGTCATTAC CGAGCTCGAG CTCGACCGCA AGCTCGCGGT CGGCTGA
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Protein sequence | MAQQRVPPTP NNFHLWFKYS LGSASDLKRA VDILVSNKRK FDKTTNQALF DTYIGQQGTE AAVVHKVSQQ LHGVMDSAKS YLTAAIADNR THMAAIDGVA ERSEQGVDPK ILIENLVSEL AQATARAAKL EASFAEKSRE LDTIRDSLNK SEQRARTDTL TGLPNRRALE EFFRHAQIES MERDEPLSIL LIDVDHFKKF NDNYGHGVGD QVLRLVAKAL RERVRDQDLP ARYGGEELIA VLPQTDLEGC HAIAERIRRT IADCQFTRRS TGEVLPQITV SIGVGQFQFG ESMADLIDRC DRALYLAKKL GRNRVITELE LDRKLAVG
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