Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_0121 |
Symbol | rpoN |
ID | 5149169 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | - |
Start bp | 124309 |
End bp | 125946 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640555149 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_001236327 |
Protein GI | 148251742 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.515582 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGTTGA CGCAGAGATT AGAATTCCGC CAGTCGCAGT CGCTGGTGAT GACGCCGCAG CTGATGCAGG CGATCAAGCT GCTACAGCTG TCCAATCTCG ACCTCTCCAC GTTCGTTGAA GAGGAGCTTG AGCGCAATCC GCTGCTGGAG CGTGCCAATG ACGGTCCGGA AGCGCCGGTC GCCGGTGAGC AGCAGATGTC CGAGCGCTCC GAGTTCTCGG ATGCCGGCGA GGCCGGTGGT GAGGATTTCG GCGATGGCGG CGGCGCCGCC GGTGAGAGCT TCGACGGCGC CCCGGAAGAC TGGATGAGCC GCGATCTCGG CACCCGTACG GAGATCGAAC AAACCCTCGA CACCGGGCTC GACAACGTCT TCTCCGAGGA GCCGGCGGAG ACGGCCGCGC GCAACGCCCA GGACGCTGCG CCCACCACCT ACACCGAATG GGGCGGCGGC GCCTCCGGCG ACGAGGACTA CAATCTCGAA GCCTTTGTCG CGGCCGAGAC CACTTTGTCG GATCATCTCG CCGAACAGGC CGCGGTGGCC TTCACCGCGC CCGCCGATCG CATGATCGGT CAATATCTCA TCGATCTCGT CGACGAGGCC GGCTATCTGC CGGCCGATCT CGGCCAGGCT GCCGATCGGC TCGGCGCCGA ACAGGCCGAT GTCGATGCCG TGCTGGGCGT GCTGCAGACG TTCGATCCGC CCGGCATCTG CGCGCGCAAT TTGAGCGAGT GCCTGGCGAT CCAGCTGCGC GAGCTCGACC GCTATGACCC GGCGATGCAG GCTCTCGTCG AGCATCTCGA TATCCTCGCC AAGCGCGACT TTGCCAGCCT GCGCAAATTG TGCGGCGTCG ATGACGAGGA TCTCGTCGAT ATGATCGGCG AGATCCGCAG GCTCGATCCC AAGCCGGGCC TGAAGTTCGG CACGACCCGC ACCCAGACCA TGGTGCCCGA TGTCTATGTG CGTCCCGGTC CGGACGGCGG CTGGCTGGTC GAGCTCAACA GCGACACGCT GCCGCGCGTC CTGGTGAATC AGGTCTATTA CTCCGAGCTG TCGAAGACGA TCCGCAAGGA CGGCGACAAG TCCTACTTCA CCGATTGCCT GCAGAACGCA ACCTGGCTGG TGCGCGCGCT CGACCAGCGC GCACGCACCA TCCTGAAAGT GGCGACCGAG ATCGTGCGCC AGCAGGACGG CTTCTTCACC CATGGTGTCG CGCATCTGCG GCCCTTGAAC CTCAAGGCCG TTGCGGATGC GATCCAGATG CACGAATCGA CGGTGTCACG CGTCACCGCC AACAAATACA TGGCGACCAA TCGCGGCACT TTCGAGCTGA AATATTTCTT CACCGCCTCA ATCGCATCGG CCGATGGCGG CGAGGCGCAT TCGGCCGAAG CGGTGCGCCA CCACATCAAG CAACTGATCG ATGCGGAAGA TCCCTCCGCA ATCCTTTCCG ACGATACGAT CGTCGAGAAG CTGCGCGCGG CCGGCATCGA TATTGCGCGC CGCACGGTCG CAAAATACCG GGAGGCGATG CGGATCCCAT CCTCGGTGCA ACGCCGCCGC GACAAGCAGA GCATGCTGGC GCACGCGCTG TCGGGACCTG CCGGCGCCGA CCGCACCCGG GATACCGCGT CAGTTTGA
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Protein sequence | MALTQRLEFR QSQSLVMTPQ LMQAIKLLQL SNLDLSTFVE EELERNPLLE RANDGPEAPV AGEQQMSERS EFSDAGEAGG EDFGDGGGAA GESFDGAPED WMSRDLGTRT EIEQTLDTGL DNVFSEEPAE TAARNAQDAA PTTYTEWGGG ASGDEDYNLE AFVAAETTLS DHLAEQAAVA FTAPADRMIG QYLIDLVDEA GYLPADLGQA ADRLGAEQAD VDAVLGVLQT FDPPGICARN LSECLAIQLR ELDRYDPAMQ ALVEHLDILA KRDFASLRKL CGVDDEDLVD MIGEIRRLDP KPGLKFGTTR TQTMVPDVYV RPGPDGGWLV ELNSDTLPRV LVNQVYYSEL SKTIRKDGDK SYFTDCLQNA TWLVRALDQR ARTILKVATE IVRQQDGFFT HGVAHLRPLN LKAVADAIQM HESTVSRVTA NKYMATNRGT FELKYFFTAS IASADGGEAH SAEAVRHHIK QLIDAEDPSA ILSDDTIVEK LRAAGIDIAR RTVAKYREAM RIPSSVQRRR DKQSMLAHAL SGPAGADRTR DTASV
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