Gene BBta_0121 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_0121 
SymbolrpoN 
ID5149169 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp124309 
End bp125946 
Gene Length1638 bp 
Protein Length545 aa 
Translation table11 
GC content64% 
IMG OID640555149 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_001236327 
Protein GI148251742 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.515582 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTTGA CGCAGAGATT AGAATTCCGC CAGTCGCAGT CGCTGGTGAT GACGCCGCAG 
CTGATGCAGG CGATCAAGCT GCTACAGCTG TCCAATCTCG ACCTCTCCAC GTTCGTTGAA
GAGGAGCTTG AGCGCAATCC GCTGCTGGAG CGTGCCAATG ACGGTCCGGA AGCGCCGGTC
GCCGGTGAGC AGCAGATGTC CGAGCGCTCC GAGTTCTCGG ATGCCGGCGA GGCCGGTGGT
GAGGATTTCG GCGATGGCGG CGGCGCCGCC GGTGAGAGCT TCGACGGCGC CCCGGAAGAC
TGGATGAGCC GCGATCTCGG CACCCGTACG GAGATCGAAC AAACCCTCGA CACCGGGCTC
GACAACGTCT TCTCCGAGGA GCCGGCGGAG ACGGCCGCGC GCAACGCCCA GGACGCTGCG
CCCACCACCT ACACCGAATG GGGCGGCGGC GCCTCCGGCG ACGAGGACTA CAATCTCGAA
GCCTTTGTCG CGGCCGAGAC CACTTTGTCG GATCATCTCG CCGAACAGGC CGCGGTGGCC
TTCACCGCGC CCGCCGATCG CATGATCGGT CAATATCTCA TCGATCTCGT CGACGAGGCC
GGCTATCTGC CGGCCGATCT CGGCCAGGCT GCCGATCGGC TCGGCGCCGA ACAGGCCGAT
GTCGATGCCG TGCTGGGCGT GCTGCAGACG TTCGATCCGC CCGGCATCTG CGCGCGCAAT
TTGAGCGAGT GCCTGGCGAT CCAGCTGCGC GAGCTCGACC GCTATGACCC GGCGATGCAG
GCTCTCGTCG AGCATCTCGA TATCCTCGCC AAGCGCGACT TTGCCAGCCT GCGCAAATTG
TGCGGCGTCG ATGACGAGGA TCTCGTCGAT ATGATCGGCG AGATCCGCAG GCTCGATCCC
AAGCCGGGCC TGAAGTTCGG CACGACCCGC ACCCAGACCA TGGTGCCCGA TGTCTATGTG
CGTCCCGGTC CGGACGGCGG CTGGCTGGTC GAGCTCAACA GCGACACGCT GCCGCGCGTC
CTGGTGAATC AGGTCTATTA CTCCGAGCTG TCGAAGACGA TCCGCAAGGA CGGCGACAAG
TCCTACTTCA CCGATTGCCT GCAGAACGCA ACCTGGCTGG TGCGCGCGCT CGACCAGCGC
GCACGCACCA TCCTGAAAGT GGCGACCGAG ATCGTGCGCC AGCAGGACGG CTTCTTCACC
CATGGTGTCG CGCATCTGCG GCCCTTGAAC CTCAAGGCCG TTGCGGATGC GATCCAGATG
CACGAATCGA CGGTGTCACG CGTCACCGCC AACAAATACA TGGCGACCAA TCGCGGCACT
TTCGAGCTGA AATATTTCTT CACCGCCTCA ATCGCATCGG CCGATGGCGG CGAGGCGCAT
TCGGCCGAAG CGGTGCGCCA CCACATCAAG CAACTGATCG ATGCGGAAGA TCCCTCCGCA
ATCCTTTCCG ACGATACGAT CGTCGAGAAG CTGCGCGCGG CCGGCATCGA TATTGCGCGC
CGCACGGTCG CAAAATACCG GGAGGCGATG CGGATCCCAT CCTCGGTGCA ACGCCGCCGC
GACAAGCAGA GCATGCTGGC GCACGCGCTG TCGGGACCTG CCGGCGCCGA CCGCACCCGG
GATACCGCGT CAGTTTGA
 
Protein sequence
MALTQRLEFR QSQSLVMTPQ LMQAIKLLQL SNLDLSTFVE EELERNPLLE RANDGPEAPV 
AGEQQMSERS EFSDAGEAGG EDFGDGGGAA GESFDGAPED WMSRDLGTRT EIEQTLDTGL
DNVFSEEPAE TAARNAQDAA PTTYTEWGGG ASGDEDYNLE AFVAAETTLS DHLAEQAAVA
FTAPADRMIG QYLIDLVDEA GYLPADLGQA ADRLGAEQAD VDAVLGVLQT FDPPGICARN
LSECLAIQLR ELDRYDPAMQ ALVEHLDILA KRDFASLRKL CGVDDEDLVD MIGEIRRLDP
KPGLKFGTTR TQTMVPDVYV RPGPDGGWLV ELNSDTLPRV LVNQVYYSEL SKTIRKDGDK
SYFTDCLQNA TWLVRALDQR ARTILKVATE IVRQQDGFFT HGVAHLRPLN LKAVADAIQM
HESTVSRVTA NKYMATNRGT FELKYFFTAS IASADGGEAH SAEAVRHHIK QLIDAEDPSA
ILSDDTIVEK LRAAGIDIAR RTVAKYREAM RIPSSVQRRR DKQSMLAHAL SGPAGADRTR
DTASV