Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_0092 |
Symbol | ligC |
ID | 5155453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 99021 |
End bp | 100034 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640555120 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_001236299 |
Protein GI | 148251714 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.70122 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGGCGC GGTCGGTGGA TGCGATCCCG CGCGGGCACG AGTGGCAGTA TGAGCCGAAA TGGGACGGCT TCCGCTGTCT TCTGGCGCGC CACGGGGCTG ACGTGACGAT GCAGTCCAAG GCGGGCGAAG ATCTCGCACG CTACTTTCCC GAGGTGGCCG CCGCCGCGCG GGCACTGAAG GCCACGCGCT TCACGCTTGA TGGCGAGCTG GTCGTGCCGC AGGCGAAGTC GTTCTCGTTC GACGCGTTGC TGCAGCGGAT CCATCCGGCC GCGAGCCGCG TGAAGAAGCT ATCGGTGGAG ACGCCGGCGC TGTTCCTCGC CTTCGACTTG CTGGCGACGG CGAAGGATGC AGAGCTGATG GCCCGGCCGC TGCACGCAAG GCGGCTCGCG CTGGAGGCGT TCGCGAAGGC GAATTTCACG GATCATCCGA CCTTCCGGCT GTCGCCGGCC ACCACCCGCT TTGCGACCGC GCAGGACTGG TTGGCGCAGT CGGGCGGCGG CTCGGACGGC GTGATCGCCA AGCGCATCGA CCTGCCCTAC CAGGCCGGCA ATCGCGACGG CATGCAGAAG ATCAAGCGCC ATCGCTCGGC CGATTGCGTC ATCGGCGGCT TCCGCTACGC CACCAACAAG GGCGCCCAGG GCCGCAAGCT GGTCGGCTCG CTGCTGCTCG GGCTCTACGA TGATGACGGC CTGCTGCATC ACGTCGGCTT CACCTCCGCG CTCAAGAAGG AGGAGAAGCC CGCATTGACA GACAAATTAG AACCGCTGAT TGCGCCGCCC GGCTTCACCG GCAATGCGCC GGGCGGGCCG AGCCGCTGGT CGACCGCGCG CTCGACAGAA TGGTGCCCGC TCAAGCCGAA GCTGGTGATC GAGGTCTGCT ACGACCATTT CTCCGGCGAT CGCTTCCGCC ACGGCACCTC GATCCTGCGC TGGCGTCCCG ACAAATCGCC AAGGCAATGT ACGTTCGAGC AGCTCAAGCA GACGATCGCC GATCCCTTGA AGCTGCTCGC GTGA
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Protein sequence | MEARSVDAIP RGHEWQYEPK WDGFRCLLAR HGADVTMQSK AGEDLARYFP EVAAAARALK ATRFTLDGEL VVPQAKSFSF DALLQRIHPA ASRVKKLSVE TPALFLAFDL LATAKDAELM ARPLHARRLA LEAFAKANFT DHPTFRLSPA TTRFATAQDW LAQSGGGSDG VIAKRIDLPY QAGNRDGMQK IKRHRSADCV IGGFRYATNK GAQGRKLVGS LLLGLYDDDG LLHHVGFTSA LKKEEKPALT DKLEPLIAPP GFTGNAPGGP SRWSTARSTE WCPLKPKLVI EVCYDHFSGD RFRHGTSILR WRPDKSPRQC TFEQLKQTIA DPLKLLA
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