| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0089 |
|---|
| Symbol | |
|---|
| ID | 5155450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 91842 |
|---|
| End bp | 94988 |
|---|
| Gene Length | 3147 bp |
|---|
| Protein Length | 1048 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640555117 |
|---|
| Product | DNA helicase/exodeoxyribonuclease V, subunit B |
|---|
| Protein accession | YP_001236296 |
|---|
| Protein GI | 148251711 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3893] Inactivated superfamily I helicase |
|---|
| TIGRFAM ID | [TIGR02786] double-strand break repair protein AddB, alphaproteobacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.476876 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTCT TCACTGTTCC GATCTCGGCC CCGTTCCTGC GCAGCGTGAT CGCGGCGCTG
GTGGACGGCC GGCTGGTCGA CGGTTTTGAG GCGCGCAGCG ATCCTGCGCG GCTCGCGACT
GCGACCCTGT ATCTGCCGAC GCGCCGCTCG CTCCGTGTCG CGCGCGAAAT GTTCCTGGAC
GAGCTGAAGA CCGACGCCGC GGTGCTGCCG CGCCTCGTCG CGCTCGGCGA CATCGACGAG
GACGAGCTGG CCTTCGCCGA GGATCGCGAC GCATTCCTCG GGCCGGCTCC GCTGGAGATC
CCGGAGCGGC TCGCCGATCT GCAGCGGCGG CTCACTCTGG CGCGGCTGGT GGCGGCCTGG
GCCAAGACGC CGGTGTCGGC ACCGCTGGTG ATTGGCGGCC CCGCCTCGAC CTTGGCGCTG
GCCGGCGACC TCGCGCGGCT GATCGACGAC ATGGTGACGC GCGGCGTGTC GTGGGAGGCG
CTGGACGCGC TGGTGCCGGA CCAGCTCGAC AAATACTGGC AATATTCGCT GGAGTTCCTG
CGCATCGCGC GCACGGCATG GCCGGCCTAT CTGCAGGAGA TCGAGCGCAT CGAGCCGGCG
GCGCGGCGCG ACCTGCTGAT CGCCGCCGAA GCCGCGCGGC TCTCGGCGCA TCCCGATGGA
CCCGTCATTG CCGCGGGCTC GACCGGCTCG ATGCCGGCGA CGGCAAAATT CCTGCTGGCG
GTGGCGAAGC TGCCGCACGG TGCCGTGGTG CTGCCCGGGC TCGACACCGA TCTCGATGAA
GCCGCATGGA ATTCGATCGG CGGCGCCAAG GATCGCGCCG GCCGCGTGAT CACGCCGCCC
GCCGTCAACC ATCCGCAATA TGCGATGCAC CTGCTGCTCA AGCGCTTCGG CCTGGAGCGG
CGCGACGTGA TCCGGCTCGC GCATCCCGGC CGCGGCGGCC GCGAGGTGCT GATCTCCGAA
GCGATGCGGC CGTCGGAAGC GACCGCGGTC TGGCACGAGC GGCTGCGCCA GCTCGACGTC
GCCGCCAACA TCGCCGAGGC AATGGACAAT CTCGCTGTCG TCGCCGCGCC CAATCCGGAG
ATGGAGGCCC TGGCGATTGC CATCGCCATG CGCGAGGCCC GCCATCTCGG CAAATCGGCC
GCGCTGGTGA CGCCGGACCG CACGCTGGCG CGCCGCGTGA TGGCAGCGCT GACGCGCTGG
CACCTGACCT TCGACGATTC CGGCGGCGAT GCGCTGTTGG AAACGCCGGC CGGCATCTTT
GCGCGCCTCG CTGCCGAGGC TGCCGCGCGC AGCCTGGAGC CGCCGACCCT GCTGGCGCTG
CTCAAGCACC CGCTGTGCCG CCTCGGCCGG GCCGCCAAGG GCTGGACAAG CGCGATCGAG
ACGCTCGAGC TCGCGATGCT TCGCGGGACG CGGCCGCAAG CCGGCACCAG CGGGCTCGCG
CGCGACTTCG CCCGCTTCCG CGACGAGCAT ACCAGGCTGC ATCAGGGCGA AGCCTCATCG
CTGCACCGGG CCGAGCCGCG CGCGCGGCTG AGCCCTGAGC AACTCGACCG CGCCGGCGCG
CTGATCGCGC AATTGCAGAC CGCGCTGGCG CCGCTGGAAA ATCTTGCCTC GCCGCGCCCG
CAGGATTTCG CCGAGCTCGC GGCGCGGCAT CGCGAGGTGC TGATCGCGCT GTCGACCGAT
GATGTCGGTC TCAGCACCGC CTTCACCGAC CGCGACGGCG CGGCGCTGGC GCGCTGCTTC
GACGATCTCC TCGCCTCAGG CGAGCGCTGC GGCCTGATGG CGCCGCTGTC AGACTATCCG
GACCTGTTCC ACACCGCCTT CTCCGATCGC GCGGTGCGCC GCCCCGAGCG CCATGGCGCG
CAGCTGCAGA TCTACGGCCC GCTCGAAGCG CGGCTGATGC AGGCCGATCG CATGATCATC
GGCGGTCTCA TCGAGGGCGT GTGGCCGCCG GCGCCGCGCA TCGATCCCTG GCTCAGCCGC
CCGATGCGGC ATCAGCTCGG CCTTGATCTG CCCGAGCGCC GCATCGGCCT GTCGGCGCAT
GACTTCGCGC AGCTGCTGGG CGCCCCCGAG GTCATCTTGA CCCACGCGGC GAAATCCGGC
GGCGCGCCGG CTGTCGCGTC GCGCTTCCTG CATCGGCTCG AAGCCGTCGC CGGGGCCGAC
CGCTGGAAGG CGGCGACCGC ACGTGGCGAG ACCTACGTCC GCTATGCCGA GGTGCTCGAC
CAGCCCCCCG AGGTGAAGCC GGTCGAACAG CCGGCGCCGA AGCCGCCGCT GGCGGCGCGT
CCGCTGCGCA TGTCGGTCAC CGCCATCGAG GACTGGCTGC GCGATCCCTA CACCATCTTC
GCGCGCTACA TCCTCAAGCT TGATCCGCTC GACCCGGTCG ACATGCCGCT GTCGGCGGCG
GATCGCGGCT CGGCGATCCA CGAGGCGATC GGCGAGTTCA CGCAAACCTA TGCCGATGCG
CTGCCGCCGG ATCCCGCGCC TGTGCTGCGG CAGATCGGCG AGAAGCACTT TGCGCCGCTG
ATGGAGCGCC CCGAGGCGCG GGCGCTGTGG TGGCCGCGCT TCCAGCGCAT CGCGGGCTGG
TTCGCGGCCT GGGAGAGCGC ACGCCGCGAG CAGATCGGCG CCATCACTGC GGAGATCCGC
GGCGAGATCG GCATTCCCTT GAGTCCTGAC CGGACCTTCA TCCTGTCGGC GCGCGCCGAC
CGCATCGAGC GCCGCGCCGA AGGCACCTAC GCCATTCTCG ACTACAAGAC CGGCCAGCCG
CCGACGGCCA AGCAGGTGCG CATGGGCCTG TCGCCGCAGC TCACCTTGGA AGCGGCGATC
CTGCGCGAAG GTGGGTTCGA CGGCATCCCC GCCGGCAGCC TGATCAGCCA GCTCGTCTAT
ATCAGGTTGT CCGGCAACAA CCCGCCGGGC GAGGAGCGCA TTCTCGAATT GAAGATCAAC
AAGAGCGACC CGCCGCAGCA TCCGGACCAG GCCGCGCAGG AGGCGCGCGC CAAGCTCGAA
GCGCTGATCC GCAGCTTCGA GGACATCAAT CAGGGCTACA CCTCACTGAA CCTGTCGATG
TGGGCCAACC GCTACGGCGC CTATGACGAC CTCGCCCGCA TCAAGGAATG GTCGGCGGCC
GGTGGTCTGG GAGTGGAGGA ATGGTGA
|
|---|
| Protein sequence | MRVFTVPISA PFLRSVIAAL VDGRLVDGFE ARSDPARLAT ATLYLPTRRS LRVAREMFLD
ELKTDAAVLP RLVALGDIDE DELAFAEDRD AFLGPAPLEI PERLADLQRR LTLARLVAAW
AKTPVSAPLV IGGPASTLAL AGDLARLIDD MVTRGVSWEA LDALVPDQLD KYWQYSLEFL
RIARTAWPAY LQEIERIEPA ARRDLLIAAE AARLSAHPDG PVIAAGSTGS MPATAKFLLA
VAKLPHGAVV LPGLDTDLDE AAWNSIGGAK DRAGRVITPP AVNHPQYAMH LLLKRFGLER
RDVIRLAHPG RGGREVLISE AMRPSEATAV WHERLRQLDV AANIAEAMDN LAVVAAPNPE
MEALAIAIAM REARHLGKSA ALVTPDRTLA RRVMAALTRW HLTFDDSGGD ALLETPAGIF
ARLAAEAAAR SLEPPTLLAL LKHPLCRLGR AAKGWTSAIE TLELAMLRGT RPQAGTSGLA
RDFARFRDEH TRLHQGEASS LHRAEPRARL SPEQLDRAGA LIAQLQTALA PLENLASPRP
QDFAELAARH REVLIALSTD DVGLSTAFTD RDGAALARCF DDLLASGERC GLMAPLSDYP
DLFHTAFSDR AVRRPERHGA QLQIYGPLEA RLMQADRMII GGLIEGVWPP APRIDPWLSR
PMRHQLGLDL PERRIGLSAH DFAQLLGAPE VILTHAAKSG GAPAVASRFL HRLEAVAGAD
RWKAATARGE TYVRYAEVLD QPPEVKPVEQ PAPKPPLAAR PLRMSVTAIE DWLRDPYTIF
ARYILKLDPL DPVDMPLSAA DRGSAIHEAI GEFTQTYADA LPPDPAPVLR QIGEKHFAPL
MERPEARALW WPRFQRIAGW FAAWESARRE QIGAITAEIR GEIGIPLSPD RTFILSARAD
RIERRAEGTY AILDYKTGQP PTAKQVRMGL SPQLTLEAAI LREGGFDGIP AGSLISQLVY
IRLSGNNPPG EERILELKIN KSDPPQHPDQ AAQEARAKLE ALIRSFEDIN QGYTSLNLSM
WANRYGAYDD LARIKEWSAA GGLGVEEW
|
|---|
| |