| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0055 |
|---|
| Symbol | nusA |
|---|
| ID | 5152432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 56237 |
|---|
| End bp | 57850 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640555085 |
|---|
| Product | transcription elongation factor NusA |
|---|
| Protein accession | YP_001236264 |
|---|
| Protein GI | 148251679 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.255127 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTCA GCGCCAACCG GTTGGAACTG CTGCAGATCG CCGACGCCGT CGCGCGCGAG
AAGTCGATCG ACCGCGGCAT CGTGATCGCC GCCATGGAAG ACGCGATCGC CAAGGCCGCC
CGCGCCCGCT ATGGCAGCGA GACTGACGTT CACGCCGAGA TCGACCCGCG CAGAGGCGAG
CTCCGGCTGT CGCGCCATAT GCTGGTCGTC GAAAAGGTCG AGAACCCCTC CAACCAGATC
TCGCTGGATG ACGCGCGCCG CGCCAATCCG GGCGCGCAGA TCGGCGACAC CATCGCCGAC
ACGCTGCCGC CGCTGGAATA TGGCCGCATC GCCGCGCAGT CGGCCAAGCA GGTGATCGTG
CAGAAGGTGC GCGAGGCCGA GCGCGACCGG CAGTACCAGG AGTTCAAGGA CCGCATCGGC
GACATCGTCA ACGGCGTCGT CAAGCGTGTC GAATATGGCA GCGTAATCCT CGACCTCGGC
CGCGGCGAGG CGATCATCCG CCGCGACGAG ATGCTGCCGC GCGAGGTCTT CCGCAACGGC
GACCGCGTCC GCGCTTATGT GTTCGACGTC CGCCGCGAGA CCCGCGGCCC GCAGATCTTC
CTGTCGCGCA CCCATCCGCA ATTCATGGCC AAGCTGTTCG CGCAGGAAGT GCCCGAGATC
TATGACGGCA TCGTCGAGAT CAAGGCCGTC GCCCGCGATC CCGGCTCGCG CGCCAAGATC
GGCGTCGTCT CCCGCGACTC CTCGGTCGAC CCGGTCGGCG CCTGCGTCGG CATGCGCGGC
TCGCGCGTGC AGGCCGTGGT GAACGAGCTG CAGGGCGAGA AGATCGACAT CATCCCGTGG
TCGCCCGACA TCGCGACCTT CGTGGTCAAC GCGCTGGCGC CGGCCGAAGT GGCCAAGGTC
GTCATCGACG AGGACCGCGA GCGCATCGAA GTCGTCGTGC CCGACACCAA CAACCAGCTG
TCGCTGGCGA TCGGCCGGCG CGGCCAGAAC GTCCGCCTCG CGTCGCAGCT GACCGGCTGG
GACATCGACA TTCTGACCGA GCAGGAGGAA TCGGAGCGTC GCCAGGCCGA TTTCGAGAAC
TCGACCCGCG TCTTCATGGA ATCGCTCAAT GTCGACGAGG TCGTCGGCCA GCTGCTGGCG
TCCGAAGGCT TCACCTCGGT CGAGGAATTG GCGTTGGTCG ATCTCAAGGA TCTCGCCGGC
ATCGAGGGCT TCGACGAGGA GACCGCGACC GAGCTGCAGA CCCGCGCCCG CGAGTTCCTG
GAGCAGCAGG AGGCCGAGCT CGAGGCCAAG CGCAAGGAGC TCGGCGTCGA GGACGCGGTG
AAGACCGTGC CCGGCGTCAC CTCCAAGATG CTGGTCAAGT TCGGCGAGAA CGACATCAAG
ACCGTCGACG ACCTCGCCGG CTGCGCCACC GACGATCTGG TCGGCTGGAC CGAGCGCAAG
GATAGCGGCG AGCAGACCAA GCACGCCGGC ATTCTCGACG GCCTCGAGGT TTCGCGCGAC
GATGCCGAAG CCATGGTCAT GCAGGCCCGC GTCAAGGCCG GCTGGATCAG CGAAGCCGAC
ATTGCCAAGC CGGAAGCCGA GGACGAGGAC GCCTCCGAAG GACAGCCTGC CTGA
|
|---|
| Protein sequence | MAVSANRLEL LQIADAVARE KSIDRGIVIA AMEDAIAKAA RARYGSETDV HAEIDPRRGE
LRLSRHMLVV EKVENPSNQI SLDDARRANP GAQIGDTIAD TLPPLEYGRI AAQSAKQVIV
QKVREAERDR QYQEFKDRIG DIVNGVVKRV EYGSVILDLG RGEAIIRRDE MLPREVFRNG
DRVRAYVFDV RRETRGPQIF LSRTHPQFMA KLFAQEVPEI YDGIVEIKAV ARDPGSRAKI
GVVSRDSSVD PVGACVGMRG SRVQAVVNEL QGEKIDIIPW SPDIATFVVN ALAPAEVAKV
VIDEDRERIE VVVPDTNNQL SLAIGRRGQN VRLASQLTGW DIDILTEQEE SERRQADFEN
STRVFMESLN VDEVVGQLLA SEGFTSVEEL ALVDLKDLAG IEGFDEETAT ELQTRAREFL
EQQEAELEAK RKELGVEDAV KTVPGVTSKM LVKFGENDIK TVDDLAGCAT DDLVGWTERK
DSGEQTKHAG ILDGLEVSRD DAEAMVMQAR VKAGWISEAD IAKPEAEDED ASEGQPA
|
|---|
| |