Gene BBta_0052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_0052 
Symbol 
ID5152429 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp52992 
End bp54122 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content64% 
IMG OID640555082 
ProductM20 family peptidase 
Protein accessionYP_001236261 
Protein GI148251676 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGTCC CGACCAATCC GTTCGATAGC CGAACAATCC TCGATGGCAT CCGCCAATGG 
GTGGAGATTG AAACACCCAC CGAAGCCCCT GATCAGATCA ATCAATTGGT CTCTTTGGTT
TCCGAGGGCT ATCGCGGGCT GGACGCAGTG GTCGAGCGCG TATCCGGCCG GGACGGCTGC
GGCGACCACC TGATCGCCCG GTCGGGCTGG GGCCAGCAGG AGCCGGGAAT CCTGATCCTC
AGCCATCTCG ATACGGTGCA TCCCATCGGC TTTCTTCGGC GCCTGCCGTT TTCGATCGAC
GGCGACGTCG CTTTCGGGCC GGGCATCTAC GACATGAAGG GCGGCGCCTA CCTTGCTTAT
CATGCGTTTC GTCATCTCTG TTTGACCGGA AAGCGATCGC CCCTCGGCAT TACTCATTTG
TTCGTCTCCG ACGAGGAGAT CGGCAGCCCG ACCTCGCGCG TACTGATCGA AGAGGAGGGC
CGCAAGGCCA AATACGTGCT GGTGACCGAG CCGGCGCGCG ACGGCGGCAG GATCGTCACC
GGCCGCAAAG GCGTGGCGCG TTTCGATGTC ACCATCCGCG GCGTTCCGGC CCACGCCGGT
GCGCGGCCGC AGGATGGACG CAGTGCGATC CGCGAACTCG CCAACGTGAT TCACGCGCTT
GAAGCTCTCA ATGATCTTGA GCGCGGCATC ACGGTGAATG TCGGCGTCGT CCGCGGCGGC
ACGCGTCCAA ATGTGATCGC CGAGGAAGCC TATGCAGAGG TCGATGCGCG CCTGCCGACG
CCAGCAGACG CCGAGGAGAT CGTGCCGAAG ATTCTCGGCC TGACGTCGCG CAGCGAGGGC
GTCAGCGTCG AAGTGACCGG CGGCGTCAAC CGCCCGCCTT ACGTCAAGGG CAACGCCGGT
GCTGCGCTGT TCGAACATGC GCGCTCGCTC GCCGAAGAGA TCGGCTTCGA GCTTGTCGAC
ACCATCACCG GCGGCGGCTC CGACGGCAAC TTCACCGCGC CGTTCACGGC GACCTTGGAC
GGGCTCGGCG TCGACGGCAA GGGCGCACAT ACGCATTACG AGCAGATGTA CATCTCCTCG
ATCGAGCCGC GGACGCGCCT CCTCCACCGT CTCTATCAAA CCCTGCGATG A
 
Protein sequence
MTVPTNPFDS RTILDGIRQW VEIETPTEAP DQINQLVSLV SEGYRGLDAV VERVSGRDGC 
GDHLIARSGW GQQEPGILIL SHLDTVHPIG FLRRLPFSID GDVAFGPGIY DMKGGAYLAY
HAFRHLCLTG KRSPLGITHL FVSDEEIGSP TSRVLIEEEG RKAKYVLVTE PARDGGRIVT
GRKGVARFDV TIRGVPAHAG ARPQDGRSAI RELANVIHAL EALNDLERGI TVNVGVVRGG
TRPNVIAEEA YAEVDARLPT PADAEEIVPK ILGLTSRSEG VSVEVTGGVN RPPYVKGNAG
AALFEHARSL AEEIGFELVD TITGGGSDGN FTAPFTATLD GLGVDGKGAH THYEQMYISS
IEPRTRLLHR LYQTLR