| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0037 |
|---|
| Symbol | |
|---|
| ID | 5154457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 39008 |
|---|
| End bp | 40564 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640555067 |
|---|
| Product | putative virulence factor MviN-like protein |
|---|
| Protein accession | YP_001236246 |
|---|
| Protein GI | 148251661 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
|---|
| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.236522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.272739 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGTT CATTCGTCAC CGTGTTGTCA GGAACACTGG CCTCGCGCCT GCTCGGCTTC
GGCAGGGACG CGCTGATCGC CGCGCTGCTG GGCGCAGGCC CGGTCGCGGA CGCATTTCTC
GCAGCATTCC AGCTCGTCAA TGTCGTGAGG CGATTGCTGA CAGAGGGCGC GCTGAATGCA
GCGCTGGTGC CGGCGTGGCT TCGAATATAC CAGCAGGCTG GCACAATGCA GGCAGCGGCC
TTCGCCGGCC GCGTGCTCGG CACCGTCAGC GCCGGACTTT TTGCAGCAAC GGTCGGGCTC
GCACTGCTGA TGCCGCTCGT GATGGCGATC CTCGCACCGG GATTCAGCGG TGAAGAGACG
CTCACCTTGG CCGTGGATGA CTCCAGGCTG ATGCTGCCCT ATCTCGCTTT CGCCGGCCCC
TCCACCGTGC TGCTCGCGCT CTCCAGCGCA CAAAGACGGT TCGCGCTGGC GGCGTTTGCA
CCGCTGCTCT TCAACGTCGC GCTGATCGGC GTGACGATCG TGCTGCTGAC GCAACATCCG
GATCCCGCGC GGGCCGCGCT GCTGCTCGCC GCCACGATCG GCGTCGCCGG CCTGCTGCAG
CTCGCGATGC TGGCGCGGCG CGGCCGCGGC GCGCGCATCG CCTCGCCCGT GCGGCTCGCA
TTCGACGCGG AGATGCGCGG CTTCTTCGCC AACGCGTTGC CGGGCATGGT TGCCAGCGCC
GGCCCGCAGT TGCTCGCCGT CGCCGGTGCG ATCATCGCAT CGAGCCAACC CTCGGCGGTG
TCGTGGCTGT ATTTTGCCAA CCGCCTGATC GAGCTGCCGC TCGGGCTCGT CGGCGTCGCC
ATGGGCACCG TGCTGGTGCC GGAACTGACA CGGGCGCTGC ATGGCGGCAA CAAGCAGGCG
CTGGCCGAGG TGCAGTCGCA CGGCCTCGAG CTGACCATCG GGCTCGCGCT GCCGGCCACG
CTGGGGCTGA TGATCCTGAA CGATCCGATC ATTCGTTTGC TGTTCGAACA CGGCGCATTC
ACCTCGGATG ACGCGACCGC GACCGCGCAT GTTCTGGGCT GGCTGGCGGC CGCCCTTCCC
GCCCAGGTGC TGACGAAGGC ACTGCAGCCC GCTTTCTTCG CCCGCGAGGA CACGCAGACC
CCGCTGCGCG CGACCTTGAT CGGATGCGGC GTCGCGATCG CGCTGGCGTT CCTGCTCGGC
CAGCGATTCG GGGTGGACGG CATCGCGGCG GGATTGGCGC TCGGCGCCTG GGCCAATGCC
GCGGTGCTGA TCCGGCGCGG GACCGCAAGC TTCGGCTTTG CGATCTCCCA GGCATCACGG
CGCCGGCTGC CGCGCATGGT GCTGGCGGCG GCGATCATGG GGGCGGCGCT CGCGGCAGCG
GTGCAACTGA CCAGCCCGGA GACCACGGGC CATCTCGGCC TCGCCGCGTT GCTCGCCGTG
CTGATCGGCG GAGCCGTCAT GCTCTATGTC GGGCTGCTGT CGGCCCTGCG CGTCGTGAGC
TGGGGCGAAA CCGTCCGGGC ACTACGGCAG CGGCCCGCCG GCGACTTGCA CCTTTGA
|
|---|
| Protein sequence | MIRSFVTVLS GTLASRLLGF GRDALIAALL GAGPVADAFL AAFQLVNVVR RLLTEGALNA
ALVPAWLRIY QQAGTMQAAA FAGRVLGTVS AGLFAATVGL ALLMPLVMAI LAPGFSGEET
LTLAVDDSRL MLPYLAFAGP STVLLALSSA QRRFALAAFA PLLFNVALIG VTIVLLTQHP
DPARAALLLA ATIGVAGLLQ LAMLARRGRG ARIASPVRLA FDAEMRGFFA NALPGMVASA
GPQLLAVAGA IIASSQPSAV SWLYFANRLI ELPLGLVGVA MGTVLVPELT RALHGGNKQA
LAEVQSHGLE LTIGLALPAT LGLMILNDPI IRLLFEHGAF TSDDATATAH VLGWLAAALP
AQVLTKALQP AFFAREDTQT PLRATLIGCG VAIALAFLLG QRFGVDGIAA GLALGAWANA
AVLIRRGTAS FGFAISQASR RRLPRMVLAA AIMGAALAAA VQLTSPETTG HLGLAALLAV
LIGGAVMLYV GLLSALRVVS WGETVRALRQ RPAGDLHL
|
|---|
| |