| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acry_2348 |
|---|
| Symbol | |
|---|
| ID | 5160341 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidiphilium cryptum JF-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009484 |
|---|
| Strand | + |
|---|
| Start bp | 2578862 |
|---|
| End bp | 2579767 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640554268 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001235461 |
|---|
| Protein GI | 148261334 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02249] integron integrase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGTTT CACCTATCGA ACGGCCTGTC AGCGCGCTCC GGCAGCGCAT GCTCGAAGAT
ATGGCGATGC GCGGCCTGCG ATCGGCCACG CAGCGGGACT ATATTCGCTT TGTTCAGAGC
TTCGCGGCAT TCCTCAGGCG GCCGCCGGAC ACGGCGACTG CTGAGGATAT CCGTCGCTTT
CAGGTTCACC AGCACGAGAG CGGGGTGCAA CCGCCGACGA TCAACTGCTC GGTTTCGGCG
CTACGGTTTT TCTTCACGGT GACGCTCGAT CGGCCGGACC TGTCGCGGCG CCTGGTCTTG
GCGCGGTCGC CTCGCAAATT GCCGGATGTG CTGAGTGTCG ATGAGGTCGG CCGGCTGCTC
GAGGCGGCCC CCGGCATCAA GTACAAGGCC ATTCTCGGCA CCGCCTATGG CGCCGGCCTG
CGCGTGTCGG AGGTGGCAAG CCTCAAGGTC GACGATATCG ACAGCACGCG GATGCTGATC
AGGGTCGAGC AGGGCAAGGG CCGCAAGGAC CGCAACGCCA TGCTTTCACC CCAGCTGCTC
GCCCTGTTGC GGTTGTGGTG GACGGAAGGC AAACGCCGTG GCGTCATGCT GCCCCATGGC
TGGCTGTTCC CCGGACGCAG TGCCGCCGAT CCGGTCTCGA CGCGACAGAT CAACCGCGCG
GTTCATGAGG CCGCGGAAGC GGCCGGGATC CGGAAGCGGG TCTCGCCCCA CACGCTGCGC
CATAGCTTCG CGACCCATCT TCTGGAGCAG GACGTCGATA TCCGCGTGAT CCAGGTGCTG
CTGGGGCACA GCAAGCTCGA TACGACCGCG CTCTACGCGC GTGTGGCGAC CAAGACGATA
CGCTCGGTCA CCAGTCCACT CGAGCGTTTG GCGTCACTGA TGGAGGGCAA GGCATCCACC
GGCTGA
|
|---|
| Protein sequence | MPVSPIERPV SALRQRMLED MAMRGLRSAT QRDYIRFVQS FAAFLRRPPD TATAEDIRRF
QVHQHESGVQ PPTINCSVSA LRFFFTVTLD RPDLSRRLVL ARSPRKLPDV LSVDEVGRLL
EAAPGIKYKA ILGTAYGAGL RVSEVASLKV DDIDSTRMLI RVEQGKGRKD RNAMLSPQLL
ALLRLWWTEG KRRGVMLPHG WLFPGRSAAD PVSTRQINRA VHEAAEAAGI RKRVSPHTLR
HSFATHLLEQ DVDIRVIQVL LGHSKLDTTA LYARVATKTI RSVTSPLERL ASLMEGKAST
G
|
|---|
| |