| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acry_1754 |
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| Symbol | |
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| ID | 5162367 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidiphilium cryptum JF-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009484 |
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| Strand | - |
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| Start bp | 1934517 |
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| End bp | 1937951 |
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| Gene Length | 3435 bp |
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| Protein Length | 1144 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640553671 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001234877 |
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| Protein GI | 148260750 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.430393 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCTGC TCACCGTCTA CGGCGCGCCG GAAGGGTTCG ACGCCGACCT GATCGCCCGC
CGCGCCGCCG AGGCGGGCAC GGTGCTGCAC ATCGCGCGCG ACGATGCCCG CCTCGCCCGG
CTGGAGGACG CGCTCGCCTT CTTCGCCCCC GCCGCCGAGA TCATCCGCTT CCCCGCCTGG
GACTGCCTGC CCTACGACCG CGTCTCGCCC AACCCGGCGA TCGTGGCCGA CCGCGTCGCC
GCCCTGGCCC GGCTGCTGGA ACCGGCGAAG GGCACCCGCA TCGTGCTGAC CACGGTGAAC
GCCGCGGTCC AGCGCACCCC GCCGCGCGCG CGCTTCGCCG ATGCCAGCCG CACCATCGCC
CCCGGCGGCG CCGCCCCGCC GGACGATCTC GCCCGCTTCC TCGAACAGCG CGGCTATCAC
CGCGTCGGCA CCGTCATGGA GCCGGGCGAC TTCGCCGTGC GCGGCGGCAT TTTCGATGTC
TGGCCCTCCG GCGAGCCGGC GCCGGCCCGC ATCGACCTGT TCGGCGACAC GGTGGACACG
CTCCGCCGCT TCGATCCCGG CACCCAGCGC AGCGGCGAGG CGCTGCCCTC GCTCACCTTC
CGCCCCGCCT CCGAACTCCC GCTCGACGCC GACTCGATCA GCCGCTTCCG CACCGGCTTC
CGCGAGCTGT TCGGCGCCGA GGCGCTGACC GACCCGCTCT ACGAATCGGT CTCCGAGGGC
CGCCGCCATC CCGGCATGGA GCATTTCGCG CCGCTCTTCT GCGCGACGAT GGAAACCGTG
TTCGACTATG CGCCCGGTGC CGCCATCAGC CTCGACCACC AGGCCGAGGA GGCCGCCGCC
GCCCGCTTCG AGATGATCGC CGATCACTAC GAGGCCCGCT CCGCCCCGCC CCGCGCCGGC
GAGGCGCCGT ACCGGCCGGT CGCGCCCGCG CGCCTCTATC TCGACCGCGC CGGCCTCGAT
GCGCTGCTCC GCGCCCGCGG GGCAACCGTG TTCTCGCCCT TCTCCCGGCC CGAGGGCGCC
GAGGGCGTGG AAGCCGGCGG CCGCCCCGGC GCCATCCTCG CCTCCGCCCA GGGCATCGCC
TCGGTCTATG AGGAATTCCG CCTGCTCGCC GCCCGCTGGC GCGAGGCCGG GCGCCGCGTC
GTCCTCGCCG CCTGGTCCGC CGGCTCGCGC GACCGTCTCG CCGCCCTGCT GCGCGACCAC
GGCATGCGCT CGATCCCGAT CGACAACGCC GCCGAGGCCC GCATCGCCCA GGGCGACGCC
GTGCTGCTCG CCGTCCTCGG TCTCGAACGC GGCTATGTCG CCGACGATCT CGCCATCGTC
GCCGAGCAGG ACCTGCTCGG CCAGCGCATC GCCCGCCCGC CGCGCCGCCG CCAGCGCGCC
GACCAGTTCA TCGCCGACGC TACCGAAATC GCCGAGGGCG ATCTCGTCGT GCATCAGGAT
CACGGCATCG GCCGCTATGA CGGGCTGGTG ACGCTGAGCG TCGAGGGCGC GCCGCATGAC
TGCCTGCGCA TCCTCTATGA TGGCGACCAG AAGCTCTTCC TGCCGGTCGA GAACATCGAC
ATGCTCTCCC GCTTCGGCAG CGAGACCGCC GGCGTCGGGC TCGACCGCCT GGGCGGCGCC
TCCTGGCAGG CGCGCAAGGC CAAGGCCCGC AACCGCATCC GCGACATGGC GGCCGGCCTC
ATCCGCATCG CCGCCGAGCG CAAGCTGCAC GACGCCGCGA TCCTCGCCGC CGATGACGGC
GCCTTCGCCG AATTCTGCGC CCGCTTCCCC TACACCGAAA CCGAGGACCA GGCTCGCGCC
ATCGCCGACG TGATGGAAGA TCTCGCCGCC GGCAAGCCGA TGGACCGGCT GGTCTGCGGC
GATGTCGGCT TCGGCAAGAC CGAGGTCGCG CTCCGCGCCG CCTTCATCGC CGCGATGTCC
GGCGCCCAGG TCGCCGTGGT GGTGCCGACC ACGCTGCTCG CCCGCCAGCA CTACCGCCTG
TTCTCCGAGC GCTTCGCCGG CCTGCCCATC CGCGTCGAGC AGCTCTCCCG CCTCGTCTCC
GCCAAGGATA CCGCGAAGGT GAAGGCCGGC CTCGCCGACG GCACGGTGAA CATCGTCGTC
GGCACCCATG CGCTGCTGTC GAAAACGATC GCCTTCGCCG ACCTCGCGCT GCTGATCGTC
GACGAGGAGC AGCATTTCGG CGTCGCCCAC AAGGAACGGC TGAAGCAGCT CAAGGCGGAC
ATCCACGTCC TCACCCTGAC CGCGACGCCG ATCCCCCGCA CCCTCCAGCT CGCGCTGACC
GGCGTGCGCG ACCTCTCGCT GATCACCACC CCGCCGGTCG ACCGTCTCGC CGTGCGCACC
TTCATCATGC CGTGGGACAA GCTGGTGATC CGCGAGGCCA TCGCCCGCGA GCGCTTCCGC
GGCGGGCAGA TCTTCTGCGT CGTCCCGCAT ATCGAGGATA TCGACCGGAT GCGCGAGCGC
CTGGCCGAGA TCGCGCCGGA CCTGCGCACC GCCACCGCCC ATGGCCGCCT GCCGCCGACC
GAGATCGAGC GGGTGATGAC CGAGTTCAGC GAAGGCAAGC ACGACGTCCT GCTCGCCACC
AACATCGTCG AATCCGGGCT CGACATGCCG GCGGTGAACA CGATCCTGAT CTGGCGCGCC
GATCTCTTCG GCCTCGGCCA GCTCTACCAG CTGCGCGGCC GCGTCGGCCG CGGCAAGCAG
CGCGGCTACG CCTATCTCAC CTGGCCCGCC TCGCACACGC TCGCCGCCTC CTCGCAGAAG
CGCCTCGAAG TGATGCAGAC GCTCGACACG CTCGGCGCCG GCTTCACCCT CGCCTCGCAC
GATCTCGACC TGCGCGGCGC CGGCAACCTG CTGGGCGACG AACAGTCCGG CCATATCCGC
GAGGTCGGCA TCGAGCTCTA CCAGCAGATG CTGGAGGATG CGGTGGCCGA ACTGCGCGCG
GCCGGCGGCA GCGAATCGCG CGAGGCCGCG CGGGACTGGA CGCCGAATAT CAGCCTCGGC
CTGCCCGTCC TCATCCCCGA AGCCTATGTG GCCGACCTGC CGGTCCGCCT CGGCCTCTAC
CGCCGCATCG GCGGACTCGC GACCGATGCC GAGAGCGAGG CGCTCGCCGC CGAGCTGGTC
GACCGTTTCG GCCCGATGCC CGAGGAGGTG GAAAACCTCC TCGCCACGGT GGCGCTGAAG
CGCGCCTGCC GCGCCGTCGG CGTCGAGAAG CTGGAGGCCG GGCCGAAGGG CATGGTCGTC
GCCTTCCGCG GCAACGCATT CGCCAATCCC GGCGGCCTCG TCGCCTGGCT CGCCACCCGC
GCCGGCCTGC TCCGCCTGCG CCCGGACCAC AAGCTGGTCA TGGTCCGCGA GATGGACGTG
AAGGCCCGCC TCGCCGCGGC CCGCGACATA ATATCGAACC TGCAACGCAT TATCGACCAG
TCGAAGGCGG CATGA
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| Protein sequence | MSLLTVYGAP EGFDADLIAR RAAEAGTVLH IARDDARLAR LEDALAFFAP AAEIIRFPAW
DCLPYDRVSP NPAIVADRVA ALARLLEPAK GTRIVLTTVN AAVQRTPPRA RFADASRTIA
PGGAAPPDDL ARFLEQRGYH RVGTVMEPGD FAVRGGIFDV WPSGEPAPAR IDLFGDTVDT
LRRFDPGTQR SGEALPSLTF RPASELPLDA DSISRFRTGF RELFGAEALT DPLYESVSEG
RRHPGMEHFA PLFCATMETV FDYAPGAAIS LDHQAEEAAA ARFEMIADHY EARSAPPRAG
EAPYRPVAPA RLYLDRAGLD ALLRARGATV FSPFSRPEGA EGVEAGGRPG AILASAQGIA
SVYEEFRLLA ARWREAGRRV VLAAWSAGSR DRLAALLRDH GMRSIPIDNA AEARIAQGDA
VLLAVLGLER GYVADDLAIV AEQDLLGQRI ARPPRRRQRA DQFIADATEI AEGDLVVHQD
HGIGRYDGLV TLSVEGAPHD CLRILYDGDQ KLFLPVENID MLSRFGSETA GVGLDRLGGA
SWQARKAKAR NRIRDMAAGL IRIAAERKLH DAAILAADDG AFAEFCARFP YTETEDQARA
IADVMEDLAA GKPMDRLVCG DVGFGKTEVA LRAAFIAAMS GAQVAVVVPT TLLARQHYRL
FSERFAGLPI RVEQLSRLVS AKDTAKVKAG LADGTVNIVV GTHALLSKTI AFADLALLIV
DEEQHFGVAH KERLKQLKAD IHVLTLTATP IPRTLQLALT GVRDLSLITT PPVDRLAVRT
FIMPWDKLVI REAIARERFR GGQIFCVVPH IEDIDRMRER LAEIAPDLRT ATAHGRLPPT
EIERVMTEFS EGKHDVLLAT NIVESGLDMP AVNTILIWRA DLFGLGQLYQ LRGRVGRGKQ
RGYAYLTWPA SHTLAASSQK RLEVMQTLDT LGAGFTLASH DLDLRGAGNL LGDEQSGHIR
EVGIELYQQM LEDAVAELRA AGGSESREAA RDWTPNISLG LPVLIPEAYV ADLPVRLGLY
RRIGGLATDA ESEALAAELV DRFGPMPEEV ENLLATVALK RACRAVGVEK LEAGPKGMVV
AFRGNAFANP GGLVAWLATR AGLLRLRPDH KLVMVREMDV KARLAAARDI ISNLQRIIDQ
SKAA
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