Gene Acry_1685 details

Gene Information

• Locus tag: Acry_1685
• ID: 5162584
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidiphilium cryptum JF-5
• Kingdom: Bacteria
• Replicon accession: NC_009484
• Strand: +
• Start bp: 1861136
• End bp: 1863085
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 640553600
• Product: squalene-hopene cyclase
• Protein accession: YP_001234809
• Protein GI: 148260682
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1657] Squalene cyclase
• TIGRFAM ID: [TIGR01507] squalene-hopene cyclase; [TIGR01787] squalene/oxidosqualene cyclases

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCGATA CGATTTCCTT CGATTTCGAT GCCCTCGACC AGGCGATCAG CCGCGCCCAC 
GCGCGGCTTT CGGCGGAACA GCGCGCGGAC GGCCATTACG TCTACGAACT CGAGGCCGAC 
GCGACGATCC CCGCCGAATA CGTCCTGCTC GAACATTTCC TCGACCGGAT CGACCCCGAG 
CTTGAAGCGC GCATCGGCGT GTTCCTGCGC GGCATCCAGG GCAATTCGCC GCAGAATCCC 
GGCGGCTGGC CGCTCTTCCA TGACGGGGCG ATGGACATTT CGGCCAGCGT GAAGGCCTAT 
TTCGCGCTGA AGGCGATCGG CGACGACCCG GACGCCCCGC ACATGCGCCG CGCACGCGAA 
GCCATCCTCG CCCGCGGCGG GGCGGCGCGC ACCAATGTGT TCACCCGCAT CCAGCTCGCG 
CTGTTCGGCG CCGTCCCCTG GCGGGCCTGC CCGGTCATGC CGGTCGAGAT CATGCTGCTG 
CCGGACTGGT TCCCGATCAC CATCTGGAAG ATCAGCTACT GGTCGCGCAC CGTCATAGCA 
CCTCTGCTGG TGCTGCTGAC CGAGCGCCCC ATCGCGCGCA ACCCGCGCAA CGTCCGGATC 
GACGAGCTGT TCGTCACCCC GCCCGATCAG GTGACCGACT ATATCCGCGG CCCCTACCGC 
TCGAACTGGG GCTACCTGTT CAAGGCGATC GATTCGGCGC TGCGCCCGCT CGAGCGGCAT 
TTCCCCGCCC GCAGCCGCAA GCGCGCGATC CAGGCGGCGA TCGACTTCAT CACCCCGCGC 
CTGAACGGCG AGGACGGGCT GGGCGCCATC TACCCCGCCA TGGCCAACAC GGTGATGATG 
TATCACACGC TCGGCTACAG CCCCGACCAC CCGGATTACG CGACGGCCTG GGCCTCGGTC 
CGCAAGCTGG TGACCGATGC CTCCTACCGT TTCGAGGGGG CGAGCTACGT GCAGCCCTGC 
CTCTCCCCGG TCTGGGACAC CTCGCTGGCC GCACACGCCC TCGCCGAGGC CGGCAGCCCC 
GGCGATGCCC AACTCGCCGC CGCCTGCGAC TGGCTGATCC CCCGCCAGAT CCTCGACGTG 
AAGGGCGACT GGGCCTATCG CAAGCCGGAC GCCCCGCCCG GCGGCTGGGC CTTCCAGTAC 
AACAACGCGC ACTACCCCGA CGTGGACGAT ACCGCCGTGG TCGGCATGAT CCTCGACCGC 
AACGGCGATC CCGCCCATCG CGAGGCGGTG GAACGCGCCC GGCAATGGAT CCTCGGCATG 
CAGAGCCGCT CCGGCGGCTG GGGCGCCTTC GATTCGGACA ACGAGTTCCA CTACCTCAAC 
CACATCCCCT TCGCCGATCA CGGCGCCCTG CTCGACCCGC CGACGGCGGA CGTCACCGCG 
CGCTGCATCT CCTTCCTCGC CCAGCTCGGC CACGCGGAAG ATCGCCCGGC GATCGAGCGG 
GGCGTCGCCT ATCTGCGCCG CGAGCAGGAA CAGGACGGCT CCTGGTTCGG CCGCTGGGGC 
ACGAACTACA TCTACGGCAC CTGGTCTTCG CTCTGCGCGC TGAACGCCGC CGGCGTGGCG 
CAGGACGACC CGATGATGGT CCGCGCCGTC GAATGGCTGC TCGCCCGCCA GCGGCCGGAT 
GGCGGCTGGG GCGAGGATTG CGAGACCTAC GCCCACGCGA AGCCCGGCGA GTATCACGAA 
AGCCTGCCCT CGCAGACCGC CTGGGCGCTG CTCGGCCTGA TGGCCGCCGG CCAGGCCGAG 
CACGAGGCCG TCGCCCGCGG CATCGCCTGG CTGCAATCGG TGCAGGAAGA CGACGGCTCG 
TGGACCGAAC AGCCCTATAA CGCGGTCGGT TTCCCGCGGG TGTTCTACCT GCGCTACCAC 
GGCTATCCAC GGTTCTTCCC GCTGCTGGCG ATGGCGCGCT ACCGCAACCT CGCCCGCGGC 
AACAGCCGGC AGGTGCAGTT CGGATTCTGA 

 

Protein sequence

MFDTISFDFD ALDQAISRAH ARLSAEQRAD GHYVYELEAD ATIPAEYVLL EHFLDRIDPE 
LEARIGVFLR GIQGNSPQNP GGWPLFHDGA MDISASVKAY FALKAIGDDP DAPHMRRARE 
AILARGGAAR TNVFTRIQLA LFGAVPWRAC PVMPVEIMLL PDWFPITIWK ISYWSRTVIA 
PLLVLLTERP IARNPRNVRI DELFVTPPDQ VTDYIRGPYR SNWGYLFKAI DSALRPLERH 
FPARSRKRAI QAAIDFITPR LNGEDGLGAI YPAMANTVMM YHTLGYSPDH PDYATAWASV 
RKLVTDASYR FEGASYVQPC LSPVWDTSLA AHALAEAGSP GDAQLAAACD WLIPRQILDV 
KGDWAYRKPD APPGGWAFQY NNAHYPDVDD TAVVGMILDR NGDPAHREAV ERARQWILGM 
QSRSGGWGAF DSDNEFHYLN HIPFADHGAL LDPPTADVTA RCISFLAQLG HAEDRPAIER 
GVAYLRREQE QDGSWFGRWG TNYIYGTWSS LCALNAAGVA QDDPMMVRAV EWLLARQRPD 
GGWGEDCETY AHAKPGEYHE SLPSQTAWAL LGLMAAGQAE HEAVARGIAW LQSVQEDDGS 
WTEQPYNAVG FPRVFYLRYH GYPRFFPLLA MARYRNLARG NSRQVQFGF