Gene Acry_1216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAcry_1216 
Symbol 
ID5159894 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidiphilium cryptum JF-5 
KingdomBacteria 
Replicon accessionNC_009484 
Strand+ 
Start bp1352846 
End bp1353400 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content70% 
IMG OID640553130 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_001234346 
Protein GI148260219 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.00257638 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCGAGC CGCTCGACCT GCCCGGCGTC ATGCTCATCA CCCCGCCCCG CTTCGCCGAT 
TCCCGCGGCT GGTTCAGCGA AACCTGGAAC CAGGCAAGGC TCGCCGCCCT CGGCTTCACC 
GAAACCTTCG TGCAGGACAA CCACTCCTCC TCCACCCGCC CCGGAACCAT CCGCGGCCTG 
CACTGCCAGC TCGCCCCCTT CGCCCAGGGC AAGCTCGTCC GCTGCATCCG CGGCGCGATC 
TGGGACGCCG CCGTCGACAT CCGCCACGGC TCGCCCAGCT TCGGCCGCCA CGCCGCCGCC 
GAGCTCTCCG CCGCCAACGG GCGCCAGCTC TGGATCCCGC CCGGCTTCCT GCACGGCTTC 
TGCACCACCG AGCCCGATAC CGAGGTCGTC TACAAGGTCA CCGCCCCCTA CGACAAAGCC 
TCCGAACGCG GCGTCATCTG GAACGATCCC GATCTCGCCC TGCCCTGGCC CGTCCCCGCC 
GGCACCGCCC TCCTCTCCGA CAAGGACAAT CTCCTGCCCC GCCTGGCCGA GGCCGAACCC 
TGGTTCAGGC TCTGA
 
Protein sequence
MIEPLDLPGV MLITPPRFAD SRGWFSETWN QARLAALGFT ETFVQDNHSS STRPGTIRGL 
HCQLAPFAQG KLVRCIRGAI WDAAVDIRHG SPSFGRHAAA ELSAANGRQL WIPPGFLHGF 
CTTEPDTEVV YKVTAPYDKA SERGVIWNDP DLALPWPVPA GTALLSDKDN LLPRLAEAEP 
WFRL