| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acry_0729 |
|---|
| Symbol | |
|---|
| ID | 5162196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidiphilium cryptum JF-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009484 |
|---|
| Strand | - |
|---|
| Start bp | 814685 |
|---|
| End bp | 817360 |
|---|
| Gene Length | 2676 bp |
|---|
| Protein Length | 891 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640552645 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_001233869 |
|---|
| Protein GI | 148259742 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.074453 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCCA TCGTCGTCGT TGAATCCCCC GCCAAGGCCA AGACGATCAA CAAGTATCTC
GGCGACGGAT TCACCGTTCT CGCCTCCTTC GGCCATGTCC GCGACCTGCC GCCGAAGGAC
GGCTCGGTCC GCCCGGACGA GGATTTCGCG ATGTCCTGGG AGGAGGACGC CCGCGGCGAC
CGCCAGGTCG CGGCCATCGC CAAGGCGCTG AAAGGGGCGG ACACGCTCTA CCTCGCCACC
GACCCCGATC GCGAGGGCGA GGCGATCTCC TGGCATGTCC GCGCCATGCT CGAGGCGCGC
AACGTGCTCA AGGGCAAGCA GGTCCGCCGC ATCACCTTCA ACGAGATCAC CAAATCGGCG
GTGCAGGCCG CCCTCCGCGC CCCGCGCGAC CTCGACACCC CGCTGATCGA GGCCTATCTC
GCCCGCCGCG CGCTCGATTA TCTGGTCGGC TTCACCCTCT CGCCGGTGCT CTGGCGCAAG
CTGCCCGGCA GCAAGAGCGC CGGACGCGTG CAGTCGGTCG CGCTGCGGCT GATCTGCGAG
CGCGAGGCCG AGATCGAGCT GTTCCGCCCG CGCGAATACT GGACGATCGA GGCCGAGTTC
CGCACCCCCG CCGGCGCGCC GTTCCGCGCC CGCCTCACCC ATCTCGACGG CCGCAAGCTC
GACCAGTTCG ACCTCGCGGA CAAGGCGGCG GCCGATGCGG CGAAGGCGGC GGTCGAGCGT
GGTGCCTTCA GCGTCGTCTC GATCGAGAAG AAGCGCGTCC GCCGCAACCC GCCGCCGCCC
TTCACCACCT CGACCCTGCA GCAGGACGCC TCGCGCAAGC TGCACATGAC GGCGCAGGCC
ATCATGCGCA CCGCCCAGCA GCTCTACGAG GGTGTGGAGA TCGGCGGCGA GACGGTCGGC
CTGATCACCT ATATGCGAAC CGACGGCGTG CAGATGGCGC GCGAGGCCAT CACCGCCGCC
CGCCAGCAGG TGAAGGACGC GTTCGGCGCG AACTACCTGC CCGCCGCCCC GCGCGAATAC
CAGTCGAAGG CGAAGAACGC GCAGGAGGCC CACGAGGCGA TCCGCCCGAC CGATTTCACC
CTCACCCCCG AGCGCGCCGC CCGCCACCTC TCGCCCGAGC AGGCGCGGCT CTACGAGCTG
ATCTACAAGC GCGCCCTCGC CTCGCAGATG CAGTCGGCCG AGCTTGACCA GACCACGGTC
GAGCTTGCCG ATGCCGCCGG CACCACCCTG CGCGCCACCG GCTCGATCCT CGCCTTCGAC
GGCTTCCTCA AGCTCTACCG CGAGGGGATG GACGAGGACC CGGAGGACGA AACCGCGAGG
CTGCTGCCGC CGATGGCGAA ATCCGACCCG CTCGCCAGCG GGCCGGTCAC CGCCGAGCAG
CATTTCACCC AGCCGCCGCC GCGCTATTCC GAGGCCACCC TGGTCAAGCG CATGGAAGAG
CTCGGCATCG GCCGCCCCTC GACCTACGCC TCGATTCTCA CCGTGCTGCG CGAGCGCAAC
TATGTGCGGA TGGAAAACCG CCGCTTCATC CCCGAGGATC GCGGCCGGCT GGTCACCGCC
TTCCTGGTCA GCTTCTTCGG CCGCTATGTC GAGACCGGCT TCACCGCCGA TCTCGAGGAG
AAGCTCGACG AGGTCTCCGA CGGACGGCTC GACTGGCGGT CGGTGATGCG GGATTTCTGG
GCAGATTTCT CTGGCGCCGT CGAGCAGATC AAGGATCTCA AGATCTCCGA CGTGATCGAT
GCGCTGGACG AGGAGCTCGG CCCGCATTTC TTCCCCGCCC GCGAGGACGG GTCCGATCCA
CGCGTCTGCC AGGCCTGCGG CACCGGCCGG CTCGGCCTGC GGCTCGGCCG CTTCGGCGCC
TTCATCGGCT GCTCGAACTA TCCCGAATGC CAGTATACCC GCCGCCTCGC CGTCGAGGGC
GGCGAGGACG AGGGCGACCA GCTGCGCGAC GGCATGAAGC TGCTCGGCGA GAACGCCGAG
GGCATCCCCG TCACGCTGCG GCGCGGCCCC TATGGCCTCT ATGTCCAGCT CGGCGAGCCG
GACCCGGAGG ACAAGAAGGC GAAGCCCCGC CGCGCCGCCC TGCCGCGGGG CATGAGCGGC
GAGACGATCA CGCTGGAGCA GGCGATCGGC CTGCTCTCGC TGCCGCGCGT GATCGGCGTG
CATCCGGAAA CGAAACAGGA AATCCAGGCC GGCATCGGCC GGTTCGGCCC CTATGTGAAG
ATGGGCCCCA TCTTCGCCTC GCTCGACAAG GATGACGACG TGCTCGCCGT CGGCCTCAAC
CGCGCGGTGA TGGTGCTGGC GAAGAAGCAG GAAGGCATCC GCGATCTCGG CCCGCACCCG
AAGGACGGCG AGAGCGTGAC CGCGCGCAAG GGCCGGTTCG GCCCCTATGT CCAGCACGGC
AAGACGGTGG CGACCCTGCC GCGCGGCAGC GAACTCGGCG CGGTGACCCT TGATGAGGCT
GTCGCCCTGC TCGCCGAGAA GGGCAAGACG CTGGCGCCGC GCGGCCGCAA GGGCGCAAAA
CCCGCAGCAA AGCCGAAGGA CGCGGCGGCG CCGAAAGCCG CCAGACCCGC GAAGGCGAAA
GCTGCCGCCA AGCCGAAAGC CGCCGCCGCG AAGCCGGAGG CGGCCGCCGC CAAGGCAAAA
CCCGCCGCCC GGAAGACCGC CCGCTCCGGC GGCTGA
|
|---|
| Protein sequence | MNAIVVVESP AKAKTINKYL GDGFTVLASF GHVRDLPPKD GSVRPDEDFA MSWEEDARGD
RQVAAIAKAL KGADTLYLAT DPDREGEAIS WHVRAMLEAR NVLKGKQVRR ITFNEITKSA
VQAALRAPRD LDTPLIEAYL ARRALDYLVG FTLSPVLWRK LPGSKSAGRV QSVALRLICE
REAEIELFRP REYWTIEAEF RTPAGAPFRA RLTHLDGRKL DQFDLADKAA ADAAKAAVER
GAFSVVSIEK KRVRRNPPPP FTTSTLQQDA SRKLHMTAQA IMRTAQQLYE GVEIGGETVG
LITYMRTDGV QMAREAITAA RQQVKDAFGA NYLPAAPREY QSKAKNAQEA HEAIRPTDFT
LTPERAARHL SPEQARLYEL IYKRALASQM QSAELDQTTV ELADAAGTTL RATGSILAFD
GFLKLYREGM DEDPEDETAR LLPPMAKSDP LASGPVTAEQ HFTQPPPRYS EATLVKRMEE
LGIGRPSTYA SILTVLRERN YVRMENRRFI PEDRGRLVTA FLVSFFGRYV ETGFTADLEE
KLDEVSDGRL DWRSVMRDFW ADFSGAVEQI KDLKISDVID ALDEELGPHF FPAREDGSDP
RVCQACGTGR LGLRLGRFGA FIGCSNYPEC QYTRRLAVEG GEDEGDQLRD GMKLLGENAE
GIPVTLRRGP YGLYVQLGEP DPEDKKAKPR RAALPRGMSG ETITLEQAIG LLSLPRVIGV
HPETKQEIQA GIGRFGPYVK MGPIFASLDK DDDVLAVGLN RAVMVLAKKQ EGIRDLGPHP
KDGESVTARK GRFGPYVQHG KTVATLPRGS ELGAVTLDEA VALLAEKGKT LAPRGRKGAK
PAAKPKDAAA PKAARPAKAK AAAKPKAAAA KPEAAAAKAK PAARKTARSG G
|
|---|
| |