| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acry_0578 |
|---|
| Symbol | |
|---|
| ID | 5162173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidiphilium cryptum JF-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009484 |
|---|
| Strand | - |
|---|
| Start bp | 649401 |
|---|
| End bp | 651299 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640552494 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001233721 |
|---|
| Protein GI | 148259594 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.177294 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCCGG AGCCCGAAGC CCCCGACGCG CCGCTGGCCT TCGCCCGATC CTTCGAGGCC
GCGCTGATCG GCAAGTCGCT CGACGGCATC ATCACGTCGT GGAGCGAAGG CGCCGAGAAT
CTGTTCGGCT ATCGCGCGGA CGAAATCATC GGGCGCTCGA TCCATGTGCT GGCGCCGCCC
GGGCGCGAGG CGGAAATGGA CGAGCTGCTG GCCCGGACGG CAAGGGGCGA GACCTTCGAC
CAGTTCGAGA CCATCCGCCG GCGCAAGGAC GGCACGCTCG TCCGCGTGCT GCTCACGCTC
AACCCGGTGC ACGATACGGA AGGCTGCATC GTCGGCATTT CCAAGATCGC GCGGGATATC
ACCGAGCATC GCAGCACCGA GGCCAGGCTC CGCTCGATCC TCGACACCGC GCCGGATGCC
ATCGTCGTGA TCGATCCGCG CGGCACCGTG AGGTCGTTCA GCCAGGCGGC GGAGCGGATG
TTCGGCTACG CCGCCGAGGA GGTCGTCGGC CGCAACGTGT CGATGCTGAT GGCCGAGCCC
CATGCCGCCG CGCATGACGG CTATCTCGCC CGTTACCTCG AAACCGGCGA ACGGCGCATC
ATCGGCATCG GCCGCGAGGT GGAGGCCCGC CGGGCCGATG GCTCGACCTT CCCGATCGAA
CTCGCCGTCG GCGAGGTCGA CCTGCCGGAG ACGAGGCTGT TCACCGGCTT CATCCGCGAC
GCCAGCAAGC GCAAGCGGCT CGAGAACGAC CTTGCCCAGG CGCAGAAGAT GGAGGCGGTG
GGCCAGCTTA CCGGCGGCCT CGCCCATGAT TTCAACAACC TGCTGGCGGT GATTTCCGGC
AATCTCGAAA TGCTGGAGAG CCATGTCGCC GGCGGCGAGG CGGCGGAACT GCTCGCCGAG
GCCCGGCTCG CCACCGAACG CGGCGCCGAA CTGGCGGCAA GGCTGCTCGC CTTCGGCCGG
CGGCAGACCC TTCGTCCGCT CGCGATCGAC GTGAACGAGC TCGTCGGGAA GATGGCGCCG
CTGTTCCGCC GCACGCTCGG CTCGCCGGTC ATGATCGAGA CCCGGCTCGC CGCCGGGCTG
CCACGCACCA TGGCGGATCC CGGACAGATC GAGACGGCGC TGCTCAACCT CGCCCTCAAC
GCGCGGGATG CCATGCCCAA GGGCGGCCGT CTCGTGATCG AGACCGGCCT GCTCCATGTC
GACGCCGACT ATGCGGCACA ACAGGCCGAG ACCCTGCCGG GCGATTATGT GGTCCTGGCG
GTGACGGATA GCGGGATCGG CATGAGCGCC GAAACGCGGG GCCGCGCCTT CGAGCCGTTC
TTCACCACCA AGGCGGTCGG CGAGGGATCG GGGCTGGGCC TGTCCATGGT CTACGGCTTC
GTCAAGCAGA GCGGCGGCCA TGTGCAGATC TATTCCGAAC CGGGCCTCGG CACCACGGTT
CGCCTGTTCC TGCCGGCGAT CCGGGCCGAA ATGCCCGCCG CCGACGACGA GGCGGCCCCC
TCCCCGCCGC CGGGCCGGGC GATCGTTCTC GTGGTCGAGG ACGATCCCGC GGTGCGGCGC
GTTGCGGAGC GCCGGCTTGC CCGCCTCGGC TATTCCACGA TCGACGCGGC GACGGGTGCT
GCCGGCATTG CGGCGCTGGA AGCCCATCCG GAGATCGCGG TGCTGTTTAC CGATATCGTC
CTGGCCGGCG GCATGTCGGG CCTCGATCTC GCCATCGCCG CGCGCGCGGC GCGACCCGAG
CTTCCGGTGC TGTTCACCTC CGGCTATGGC GATCCCATCG TGCTGAAGGG CCGCGCCCTG
CCCGCCGGGG CGATCTGGCT GCAGAAACCC TATGCCGAGG CCGCCCTCGC GAACGCGCTG
GCCGCCCTGC TCAGGCCGGT TCGCGACGAG GGCGTCTGA
|
|---|
| Protein sequence | MTPEPEAPDA PLAFARSFEA ALIGKSLDGI ITSWSEGAEN LFGYRADEII GRSIHVLAPP
GREAEMDELL ARTARGETFD QFETIRRRKD GTLVRVLLTL NPVHDTEGCI VGISKIARDI
TEHRSTEARL RSILDTAPDA IVVIDPRGTV RSFSQAAERM FGYAAEEVVG RNVSMLMAEP
HAAAHDGYLA RYLETGERRI IGIGREVEAR RADGSTFPIE LAVGEVDLPE TRLFTGFIRD
ASKRKRLEND LAQAQKMEAV GQLTGGLAHD FNNLLAVISG NLEMLESHVA GGEAAELLAE
ARLATERGAE LAARLLAFGR RQTLRPLAID VNELVGKMAP LFRRTLGSPV MIETRLAAGL
PRTMADPGQI ETALLNLALN ARDAMPKGGR LVIETGLLHV DADYAAQQAE TLPGDYVVLA
VTDSGIGMSA ETRGRAFEPF FTTKAVGEGS GLGLSMVYGF VKQSGGHVQI YSEPGLGTTV
RLFLPAIRAE MPAADDEAAP SPPPGRAIVL VVEDDPAVRR VAERRLARLG YSTIDAATGA
AGIAALEAHP EIAVLFTDIV LAGGMSGLDL AIAARAARPE LPVLFTSGYG DPIVLKGRAL
PAGAIWLQKP YAEAALANAL AALLRPVRDE GV
|
|---|
| |