| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_4287 |
|---|
| Symbol | |
|---|
| ID | 5166320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | + |
|---|
| Start bp | 4950062 |
|---|
| End bp | 4951291 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640551766 |
|---|
| Product | 3'-5' exonuclease |
|---|
| Protein accession | YP_001233003 |
|---|
| Protein GI | 148266297 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.276505 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACCTTGC GCGCAGTTGA TTTATTTTCA CCATCAGCAA GCATTTTCAG ATGCGGAACG
GCGGATTTTT TGCAAAAGCA AACGAATAAA TACCAACAAG AGTCAACTGA CATAATTGAA
GACCAGCAAG CGTTGAACCG CCTCGTGGAA CGACTCAACA CCGAAACAAC CCTTGCCTTT
GACCTGGAAG CGGATTCGCT CCATCACTAC ACGGAAAAGG TCTGCCTGAT CCAGGTCTCG
ACAAATTCGG AAACAGCCCT CATCGATCCG CTTGCCCCCC TGGATCTCTC CCCGCTCGCG
CCTATTCTGG CAAATCCTGC CGTCCGCAAG GTTTTTCACG GTGCGGATTA TGATATGCGT
TCACTCTACC GTGATTTCGG CTTCGAAGTA CGCAATCTCT TTGACACCAT GATTGCCAGC
CAATTCCTCG GCGAAAAGGA AGTCGGGCTT GCCGCAGCAT TGAAAAAAAG ATTCGGTGTA
GAGCTGGACA AGAAATATCA GAAGGCGGAC TGGAGCAAGC GCCCTTTTTC TCCGCAGATG
ATCGAGTACG CCATGAAGGA CACCTCGCTC CTCATCAAGC TTTACCTGCA ACTGGAGGAT
GAACTGCGCG CAAAGGGGAG ACTTGCCTGG GTAGAAGAGG AATCGGAAAT CGTTTCCTGC
GTCAGGGCTG CGTCACGGGA CAATGAACCG CTCTTCCTCC GCTTTAAGGG AGCGGCGAAG
CTGAAGCCCA GATCGCTTGC CGTGCTGGAG AAACTGCTGC TTTTCAGGGA CGAGCGGGCC
AGAAAAAGAG ATGTCCCCCC GTTCAGGATT CTTGGCAACG AGCCTCTTCG CGAACTGGCG
GAACTTCTAC CGCGCACAGC CGCAGATCTG ACCGGCATAC CCGGCATATC GCAGAAACTC
ATCGATACGT ACGGCCGGGA GATACTTAAC GTCGTTGCAC AAGGATTGTC GATTCCTGCC
GAGAAACTGC CGCATTATCC TACTGTGCAA CGGGTGATAA AGGATCGTTA TCAGGAAGAA
CGCCTGAAAC GGCTCAAGGA GTGGAGAGAA GGCAAGGGGG CGGCGTTGGG GCTAAGCGTG
GGGATTATTG CAAATAACAG CCTGCTCGAA GCTTTGTCGG AAGCCGCTCC CGATAGCCTG
GAGAAGCTGG CGGGCATTCC AGGCTTAAAG CGCTGGCAAA AGCAGGAATT CGGCGCCGAA
CTACTGGATT TGCTCAAAAA CGTTTCATAA
|
|---|
| Protein sequence | MTLRAVDLFS PSASIFRCGT ADFLQKQTNK YQQESTDIIE DQQALNRLVE RLNTETTLAF
DLEADSLHHY TEKVCLIQVS TNSETALIDP LAPLDLSPLA PILANPAVRK VFHGADYDMR
SLYRDFGFEV RNLFDTMIAS QFLGEKEVGL AAALKKRFGV ELDKKYQKAD WSKRPFSPQM
IEYAMKDTSL LIKLYLQLED ELRAKGRLAW VEEESEIVSC VRAASRDNEP LFLRFKGAAK
LKPRSLAVLE KLLLFRDERA RKRDVPPFRI LGNEPLRELA ELLPRTAADL TGIPGISQKL
IDTYGREILN VVAQGLSIPA EKLPHYPTVQ RVIKDRYQEE RLKRLKEWRE GKGAALGLSV
GIIANNSLLE ALSEAAPDSL EKLAGIPGLK RWQKQEFGAE LLDLLKNVS
|
|---|
| |