| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_4047 |
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| Symbol | |
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| ID | 5166826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter uraniireducens Rf4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009483 |
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| Strand | - |
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| Start bp | 4706383 |
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| End bp | 4708143 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640551526 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001232764 |
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| Protein GI | 148266058 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000898252 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAAA AAAATATGGA TGAAGTAAAA CAACTGATTG ATCTGGGTAA GGAAAAAGGA
TTTCTTACCT ATGAGGAGGT CAACGATCTC CTCCCCCCGG ACATTGTTTC TTCCGAGCAG
ATTGACGACG TCATGAGTAT GTTCGGGGAC ATGGATATCG AAATAGTCGA TTCCGCGCAA
AAGGTTAAGA TTCCCAAGGT CAAGCTTGAC CTTGAAGATG AAGAGGAACT GGAAGGCGAA
CAGGAAGAGG TGGAGTTTGA GCCGGGGACG CTCGGACGGA CCAGCGACCC TGTCCGGATG
TACCTGCGGG AAATGGGTTC CGTTTCCCTT CTGACCCGTG AAGGCGAGGT GGAAATAGCC
AAGAGGATCG AGGTCGGCGA GAGGGATGTG GCGAGTGTTA TCCTCAACAC CCCGATCACG
GTCAAAGAAG TGATCTCGCT TGGGGATAAG CTGCGCAAGT TGCAGATTGC GGCCATAGAG
ATAAGCAAAG AGGTCGAAGA GGAAGAGCTC GAGGAAGGTG AGGAAGATGT CCAGGCGACC
AGGCTCCTGA CCGTAATCGA TGAGATTCGT GCCGATGACA CGCGCATGGA AGAGCTTCAT
GCCGCCCTTG AGCAGGAGAC AGTAACCAAA AGCGAGCGGG AAAATATTTT GGCGGAACAG
CAGGAATTGA AGGCGAAAAT GGCCGATCTT CTGAAATCCC TCCGCCTCAA GGACCGCCAT
ATTGAGAAGA TATCCCAGCG GCTGAAGGAG CTTTCCTGGA AGGTGGACAA GGTGATGCAG
GAGATCGCCG ACCTGGAGAA GGAAGCCGGT GTTGCCCCTG CTGATCTGAT GCCTATGCTG
GACAAGATGC ATAAAGGTGC GGATGAGGAG AAGAAGGTCT TAAAGAAACT CGGGATTTCT
CTGGAAGAAG CGCAGAAGCT GGAGAAAAGA TTCAGGAACG CCGAGAAAAA GCTGAAAAAG
ATAGAGCAGG AGTCCGGCTT CCAGGCGACC GAGCTTTCCA CCGCCCTGCT GGCCATTGAA
GAGGGCGAAA GGAAGGCCAA GCTGGCCAAG TCGGAACTGG TGGAGGCCAA CCTCCGTCTC
GTAGTTTCCA TCGCCAAGAA GTACACAAAC CGTGGCCTGC AGTTTCTCGA TCTGATCCAG
GAAGGGAATA TCGGCCTGAT GAAGGCGGTG GACAAGTTCG AGTACCAGCG CGGCTACAAA
TTCTCGACCT ACGCCACCTG GTGGATCCGG CAGGCCATTA CCCGCGCCAT TGCCGACCAG
GCCCGCACCA TTCGCATTCC GGTCCACATG ATCGAGACCA TCAACAAACT GATCCGCACC
AGCCGCCAGC TGGTCCAGGA GATTGGCCGC GAGCCGTCGC CGGAGGAGAT TGCCGAACGG
ATGAGCCTGC CGCTGGACAA GGTGCGCAAG GTCCTCAAGA TCGCCAAGGA GCCGATCTCC
CTGGAGACAC CCATCGGCGA GGAAGAAGAT TCCCACCTGG GGGACTTCAT CGAGGACAAG
GGGGTTGTTT CTCCCCTGGA GGCGGTCATC AAGGCCAACC TTTCCGAACA GACCTCGCGG
GTGCTGTCCA CCCTCACCCC GCGCGAAGAA AAGGTGCTGC GGATGCGTTT CGGCATCGGT
GAGAAGAGCG ACCATACCCT GGAGGAGGTC GGTCAGGATT TCGAGGTGAC CCGTGAGCGT
ATCCGGCAGA TAGAGGCCAA GGCGCTGCGG AAGCTCCGCC ATCCGAGCCG GGCAAAGAAA
CTCAAGAGCT TCGTGGAATA G
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| Protein sequence | MAKKNMDEVK QLIDLGKEKG FLTYEEVNDL LPPDIVSSEQ IDDVMSMFGD MDIEIVDSAQ
KVKIPKVKLD LEDEEELEGE QEEVEFEPGT LGRTSDPVRM YLREMGSVSL LTREGEVEIA
KRIEVGERDV ASVILNTPIT VKEVISLGDK LRKLQIAAIE ISKEVEEEEL EEGEEDVQAT
RLLTVIDEIR ADDTRMEELH AALEQETVTK SERENILAEQ QELKAKMADL LKSLRLKDRH
IEKISQRLKE LSWKVDKVMQ EIADLEKEAG VAPADLMPML DKMHKGADEE KKVLKKLGIS
LEEAQKLEKR FRNAEKKLKK IEQESGFQAT ELSTALLAIE EGERKAKLAK SELVEANLRL
VVSIAKKYTN RGLQFLDLIQ EGNIGLMKAV DKFEYQRGYK FSTYATWWIR QAITRAIADQ
ARTIRIPVHM IETINKLIRT SRQLVQEIGR EPSPEEIAER MSLPLDKVRK VLKIAKEPIS
LETPIGEEED SHLGDFIEDK GVVSPLEAVI KANLSEQTSR VLSTLTPREE KVLRMRFGIG
EKSDHTLEEV GQDFEVTRER IRQIEAKALR KLRHPSRAKK LKSFVE
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