Gene Gura_3898 details

Gene Information

• Locus tag: Gura_3898
• ID: 5166923
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter uraniireducens Rf4
• Kingdom: Bacteria
• Replicon accession: NC_009483
• Strand: +
• Start bp: 4548131
• End bp: 4550077
• Gene Length: 1947 bp
• Protein Length: 648 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 640551380
• Product: type II secretion system protein E
• Protein accession: YP_001232620
• Protein GI: 148265914
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.0000000434114
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAACG ACGCGATTAT CCCGAATGGC AAATCATTAC AGGACAAGGC ATTGCTGACG 
TCCTCCGGCG TAGCCGTGAA AGATGCTGAC TCAGGCAGCG AGATTGCCGC TCTGCTTGCC 
AAGGAAGGGT TTCTTTCTCC TCAAAATCTT GCCCATGCCA AAAGGGTCAA ATCCAAGCTA 
TCTTCGCCGA AAACATTGAC ATCAGTGCTT CAGGAGCTGG GTTTCATCAG CAAAGAGCAA 
CTTCGCGACG CCCTGCTGAA AAACCTGGTC TCGGTCAGAA TCGGAGATCT TCTAGTCGAA 
CTGGGTCATT TGAAACCGGC GGATCTGCAA GCGGCCCTCG GCATCCAGAA AGAATCGAAC 
GGCGCAAAGA GACTCGGCGA GGTCCTCGTT GACAACCGCT TCATCGACGA ATTGACGTTC 
GCCGAAACCC TCGCCTTTCA GCTCGGCTTC CCATGCCTCG ATGTGGACAT AGCGGCCATC 
GACCGCTCCA TCCTCTCCAG AGTGCCGCTT CAGACGCTCT CCGACCACAA TTTCATACCG 
ATAACGGCAA AGGACGGAAA GGTGCTGGTG GCATTTGCCG ACCCACTGGA CGCGCAGGAC 
CGGGCGGTCG CGGAAAAGAT CTTCGGCAAC TCCATGGATT TCGCCATATC GACACGCAAG 
GGGATCCGCG AGGCCATCGC CTTCTTCAAA CGGAGCGGCA CACGGACTGA CACCACGGCT 
GTCGACGAAA ATACCATCAT GGGGATCGTC AATGCGTTAT TCGAGGAGGC GGTCAAGGAA 
GCGGTCAGCG ATATCCACAT CGAGCCGATG AAGGACCGGC TTCGCGTCCG TTTTCGCCGC 
GACGGCGTCT TACTGCTCCA TAAGGATTTT CCCAAGGAGC TGGCCCCGCC GATCAGCAGT 
CGGATCAAGA TCCTTGCCGA GGCTGATATT GCCGAAAGAA GACGCCATCA GGACGGCAGA 
ATCCTCTACG AGAGCGACCA GAACGGTTTC ACCCTCGACC TGCGCGTTTC GTTCTACGTC 
ACCATCTATG GCGAAAAAAT AGTGCTGCGG CTTTTAAATA AAAAGGGCGA ACTCCTGGAC 
ATCAAAGATA TCGGCATGCC GCCACGCATG CTGGAACGGT TCCTGGACGA TGCGGTTGAT 
ACGCCGAGCG GCGTGCTCAT CATCACCGGC CCTACCGGTT CCGGCAAGAC CTCGACCCTC 
TACAGTTGTG TTCACCACAT GAACAACCTC AACACATCCA TCATCACCGC GGAAGACCCG 
GTAGAGTACA TCATAGACGG CATCTCCCAG TGCTCCATCA ACACAAAAAT AGGCGTCACC 
TTTGAAGAAA CGCTTCGCCA CATTGTACGT CAGGACCCGG ACATCATCGT ACTCGGCGAA 
ATCCGTGACA CCTTTTCAGC GGAAACGGCC ATCCAGGCCG CACTCACCGG CCACAAGGTC 
CTTACCACCT TCCACACCGA AGACAGTATC GGAGGACTTC TCCGGCTGAT GAACATGAAT 
ATAGAAGCGT TTCTCATCTC CTCAACGGTA GTCTGCGTTC TGGCGCAAAG ACTGCTCCGG 
AAAGTCTGTC CACACTGCGC CGAACCGTAC ATCCCGACCC CGACCGAACT CCGCCGCCTT 
GGTTACGGCA ATGAAGAACT GAAAGGTAAT GAGTTCAAGA TCGGGCGGGG CTGCAACCAC 
TGCCGGTTCA GCGGCTATCG CGGTCGAGTC GGAATTTTTG AAATGTTGGT ATTAAACGAA 
ATGGTCAAAG ACGCTATTCT CAGTAAAAAA ACGTCCTACG AAATCAGACG TATCAGCACT 
GAAACTTCGG GCCTCGTCAC ACTCATGGAA TCGGGTTTGT CAAAGGCGGC AAAGGGATTG 
GTTTCCCTTC CTGACGCCAT CAGGATGCTG CCCCGATTGG GAAAACCGCG ACCGCTGAAT 
GAAATTCGCA GACTGCTGGG AGAATAA 

 

Protein sequence

MANDAIIPNG KSLQDKALLT SSGVAVKDAD SGSEIAALLA KEGFLSPQNL AHAKRVKSKL 
SSPKTLTSVL QELGFISKEQ LRDALLKNLV SVRIGDLLVE LGHLKPADLQ AALGIQKESN 
GAKRLGEVLV DNRFIDELTF AETLAFQLGF PCLDVDIAAI DRSILSRVPL QTLSDHNFIP 
ITAKDGKVLV AFADPLDAQD RAVAEKIFGN SMDFAISTRK GIREAIAFFK RSGTRTDTTA 
VDENTIMGIV NALFEEAVKE AVSDIHIEPM KDRLRVRFRR DGVLLLHKDF PKELAPPISS 
RIKILAEADI AERRRHQDGR ILYESDQNGF TLDLRVSFYV TIYGEKIVLR LLNKKGELLD 
IKDIGMPPRM LERFLDDAVD TPSGVLIITG PTGSGKTSTL YSCVHHMNNL NTSIITAEDP 
VEYIIDGISQ CSINTKIGVT FEETLRHIVR QDPDIIVLGE IRDTFSAETA IQAALTGHKV 
LTTFHTEDSI GGLLRLMNMN IEAFLISSTV VCVLAQRLLR KVCPHCAEPY IPTPTELRRL 
GYGNEELKGN EFKIGRGCNH CRFSGYRGRV GIFEMLVLNE MVKDAILSKK TSYEIRRIST 
ETSGLVTLME SGLSKAAKGL VSLPDAIRML PRLGKPRPLN EIRRLLGE