| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_3760 |
|---|
| Symbol | trmD |
|---|
| ID | 5166226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | - |
|---|
| Start bp | 4400632 |
|---|
| End bp | 4401375 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640551245 |
|---|
| Product | tRNA (guanine-N(1)-)-methyltransferase |
|---|
| Protein accession | YP_001232486 |
|---|
| Protein GI | 148265780 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000052464 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCG ATATTTTGAC GCTCTTTCCC GCCATGTTTG ATGGTCCGTT AACGGAAAGC
ATTCTCAAGC GCGCTGCCGA GAAGGGACTT ATTGAGGTAA AACTCCATAA CATTCGGGAT
TTTGCCTTTG ATCGGCACAG CGTAACGGAC GATTACCCTT ACGGTGGCGG CGCAGGGATG
GTGATGAAAG TGGAGCCCCT TGCGGCATGT ATTGAACATG CCAAGGTAGG CAGTCCCAGG
GCGCGTGTCA TCCTTACCAC CCCGCGGGGG CGTTCCTTCA ACCATGCTGT GGCGGAAGAG
CTGGCTCGTG AAGAAGCGCT GATTATCATC TGCGGCCGGT ACGAGGGGGT GGATGAACGG
GTCAGGGAAC TGTTCGTTGA CGACGAGATA TCCATCGGCG ACTTTGTCCT GACCGGCGGC
GAGATGGCGG CCATGGTGCT CGTTGACGCT GTTTCCCGTT TTGTTCCCGG TGTTTTGGGG
AGTGACGAGT CTGCCGTGAA TGATTCATTT GCCGATGGTC TTCTCGAATA CCCCCAGTAT
ACGCGGCCGG CGGAATTTCG GGGACTGGGC GTGCCGAGCG TGCTTTTATC CGGCAACCAT
CAGGAGATCG CCAAGTGGCG GCGCCGACAG TCTCTGGGCC GCACCGCCGC ATCGAGGCCG
GATCTGCTGA CGGATGCGCA TCTCTCTGCA AGCGACAGGG AATATCTTGA GGAATTGCAA
AGGGTAGCCG GCAGTGACGG ATAA
|
|---|
| Protein sequence | MKFDILTLFP AMFDGPLTES ILKRAAEKGL IEVKLHNIRD FAFDRHSVTD DYPYGGGAGM
VMKVEPLAAC IEHAKVGSPR ARVILTTPRG RSFNHAVAEE LAREEALIII CGRYEGVDER
VRELFVDDEI SIGDFVLTGG EMAAMVLVDA VSRFVPGVLG SDESAVNDSF ADGLLEYPQY
TRPAEFRGLG VPSVLLSGNH QEIAKWRRRQ SLGRTAASRP DLLTDAHLSA SDREYLEELQ
RVAGSDG
|
|---|
| |