Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gura_3452 |
Symbol | |
ID | 5162916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter uraniireducens Rf4 |
Kingdom | Bacteria |
Replicon accession | NC_009483 |
Strand | - |
Start bp | 4059086 |
End bp | 4060690 |
Gene Length | 1605 bp |
Protein Length | 534 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640550939 |
Product | ATP dependent DNA ligase |
Protein accession | YP_001232181 |
Protein GI | 148265475 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02777] DNA ligase D, 3'-phosphoesterase domain [TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGCTTAA AGGAATACGC ATCCAAACGG CGATTCGAGA AAACACCCGA ACCGAAACCG GACGTTCCTC ACGAGGGGCG CCGTCTCGTG TTCGTCGTGC ACAAACACGC GGCCCGGGCC CTTCATTATG ATCTCAGGCT GGAGCTGGAA GGGGTTCTGA AAAGCTGGGC CGTGCCGAAG GGACCCTCGC TGGATCCTTC CGTAAAAAGG CTGGCCGTTA TGGTTGAAGA CCATCCGCTC GATTACAGGG ATTTCGAGGG GGTTATCCCG GAGGGTAATT ACGGCGCAGG AAGCGTTATC ATCTGGGACC GGGGTTTCTA TCGTCACCCC TCTGCAGGAG ATGAGAACGA AAACGAGAAA CTTCTTCTGG ACGGATTAAG AAAAGGGGAT ATGAAGTTTG TCCTCGAAGG GGAAAAACTT CGGGGTGAAT TCGCGCTGGT CAGGATGGGA AAGGACGGGA AGTCGTGGCT GCTCCTGAAG AAAAAAGACC GCTATGCAAG CAAGGGGGAA ATTCTCCAGG AGAACCGTTC CGTCGTGTCC CATAAAACCC TGGAGGAGAT GCTCGAAGCC GGCGGCCAGA AATCTTTCAA ACAAAAAAAA ATAAATCAGA TCCGGCTTCA CGAAGCGAAG GAAAGCGAAG AGCTGCATGA TGCGCCGGTT AAACCGATGC CGCACAACAT AAAACCGATG CTCGCGACCC TGGCCAGGGA ACCGTTCGAC CATCCGGACT GGGTCTTCGA AGTGAAATGG GACGGGTACC GGGCCATCGC AGAGATGCGG GACGGAGACG TCGCGCTCTA TTCCCGAAAC CTGCTCTCGT TGCAACAAAA GTTTTCTCCC ATCGCGGACG CGTTGCGGGA ATGCAGATTC GATGCGGTTC TGGACGGCGA AATCGTCGTC GTGGATGATC GGGGACATCC CGATTTCCAG TTGCTGCAGA ATTACCAGAA GTCTGGAAAC GGCCATCTTC TTTACTACGT CTTCGACCTC CTCTACTTCC AGGGACATGA TCTGACCGGC CTCCCCCTGC TCAGGAGGAA AGAGATCCTG AAAAAAATCC TCCCTTCAGC CCCGAAAATA AAATACAGCG ATCACGTATG GAAAGATGGG GTCCTGTTTT TCACCGTCGT AAGAGAAAAG GGACTGGAGG GGATCATCGC CAAACATGCG CAAAGCGCGT ACCAGATGGG GATAAGGAGC CGGCAGTGGC TGAAGGTGAA GACGCGGCTC ACGCAGGAGG GGGTGATCGC CGGTTTCACG GAACCGAGGG GTGGGAGAAA GTGTTTCGGC ACCCTCGTCC TGGGCGTGTT CCAAGGGGAC GAGCTGATCT ACATCGGCCA TTCGGGAGGC GGATTCGGGG CGAAAGATCT GCAGGAAATC CGCGCGAAAC TGGAGCCCCT GATCCGGAAG GAATGCCCTT TTAAAGTGCG GCCGGAGACC AATACCCCGG CCACCTGGGT AAAGCCGGAG CTGGTCTGCG AGATTTCCTT ATCCGGCTGG ACTGAAGATG CCGTCATGAG ACACCCCGTT TTCCTGCGGC TGCGCGAGGA CAAAACCGCC CGCGAAGTGG TGCGCGACAG CGGCGGCGAA GGAGGTAACC TATGA
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Protein sequence | MGLKEYASKR RFEKTPEPKP DVPHEGRRLV FVVHKHAARA LHYDLRLELE GVLKSWAVPK GPSLDPSVKR LAVMVEDHPL DYRDFEGVIP EGNYGAGSVI IWDRGFYRHP SAGDENENEK LLLDGLRKGD MKFVLEGEKL RGEFALVRMG KDGKSWLLLK KKDRYASKGE ILQENRSVVS HKTLEEMLEA GGQKSFKQKK INQIRLHEAK ESEELHDAPV KPMPHNIKPM LATLAREPFD HPDWVFEVKW DGYRAIAEMR DGDVALYSRN LLSLQQKFSP IADALRECRF DAVLDGEIVV VDDRGHPDFQ LLQNYQKSGN GHLLYYVFDL LYFQGHDLTG LPLLRRKEIL KKILPSAPKI KYSDHVWKDG VLFFTVVREK GLEGIIAKHA QSAYQMGIRS RQWLKVKTRL TQEGVIAGFT EPRGGRKCFG TLVLGVFQGD ELIYIGHSGG GFGAKDLQEI RAKLEPLIRK ECPFKVRPET NTPATWVKPE LVCEISLSGW TEDAVMRHPV FLRLREDKTA REVVRDSGGE GGNL
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