| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_2787 |
|---|
| Symbol | |
|---|
| ID | 5166447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | + |
|---|
| Start bp | 3242542 |
|---|
| End bp | 3243921 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640550283 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_001231534 |
|---|
| Protein GI | 148264828 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCTG CTGTAGCTGG CTGGGAGCAG TTTTCCAAGA AAAAGGCGGC TACCTGGCTG
ATCGGCATTG CCGCCGCACT CGGGGCCATC GCTCTGCTCG GCAGCACCGG AATCGTCTTT
GCGCTGTTGC TGGCACTGAT GCTGACCGGC ATGCCGATTT CCATCGCCCT CGGTCTCACC
GTTCTTTCGT TCCTGTTCTT CTTTGCCGAT GTGCCGACTG AAGCGGTGGC GATGAAACTC
TTCACCGGCA TTGAGAAGTT CGAGATCATG GCGATCCCCT TCTTTATCCT GGCGGGGAAT
TTCCTGACCC ACGGCGGTGT TGCCAAACGG ATGATCAATT TCGCCACCTC CATAGTGGGG
CACTGGCACG GCGGCCTGGC CCTGGCCGGC GTCGTGGCAT GCGCACTGTT TGCTGCGGTG
TCCGGTTCCA GCCCGGCCAC GGTCGTGGCC ATCGGCTCCA TCATGATGCC GGCGATGGTG
AAGGCAGGTT TCCCAAAACG TTTCGGAGCC GGTGTCATCA CCACCTCCGG ATCGCTGGGC
ATCCTGATTC CACCATCGAT CCCGATGGTG ATCTATTGCG TGGCCACCAA CTCGTCGGTG
GGTGCCCTCT TCATGGGGGG CGTTATTCCC GGCCTGATGC TGGCCACCCT GCTGGGCCTG
GTTGCCTGGT ATCTTGCCCG GAAGAACAAC TACCCGCGGA TGCCCAAGGC CACGACGGCT
CAACGCATCA AGGCCTTCCG GGAGAGCGTC TGGGGGCTGC TGCTAATCGT GATCGTCCTG
GGCGGCATCT ACAGCGGCAT GTTCACCCCC ACCGAAGCAG CTGCCATGAG TGCGGTATAT
GCTTTTATCA TCGCCGTGTT CGTCTACCGC GACGTCCCGT TCAAGAAGAT CCCCAAGGTG
CTGCTAGACT CGGCCAGCAT GTCGGCCATG CTGCTCTATA TCATTACCAA CGCGGTGCTA
TTCTCCTTCC TGATGACCCA CGAGAACATC CCCCAGATCA TGGCCGACTG GATCCTCGGC
CATAACCTCG GCGTGGTCTC CTTCCTGCTG GTCACCAACG TGCTGCTCCT CCTGGCCGGC
AACGTGATGG AGCCCTCCTC CATCATCCTG ATCCTGGCGC CGATCCTGTT CCCGGTGGCA
ATGCAGCTCG GTATCGATCC GATCCACTTC GGCGTCCTGA TCACGGTGAA CATGGAAGTC
GGCATGTGTC ATCCGCCGGT AGGTTTGAAC CTGTACGTGG CCAGCGGCAT CACCAAGATG
GGGATATCGG AGCTGACGCT GGCGGTCATG CCGTGGCTTC TCGCCATGGT GGGATTCATG
CTGCTGGTAA CCTATGTGCC GGCGATATCG TTGTGGCTGC CGCGAATGCT GGGATACTGA
|
|---|
| Protein sequence | MSSAVAGWEQ FSKKKAATWL IGIAAALGAI ALLGSTGIVF ALLLALMLTG MPISIALGLT
VLSFLFFFAD VPTEAVAMKL FTGIEKFEIM AIPFFILAGN FLTHGGVAKR MINFATSIVG
HWHGGLALAG VVACALFAAV SGSSPATVVA IGSIMMPAMV KAGFPKRFGA GVITTSGSLG
ILIPPSIPMV IYCVATNSSV GALFMGGVIP GLMLATLLGL VAWYLARKNN YPRMPKATTA
QRIKAFRESV WGLLLIVIVL GGIYSGMFTP TEAAAMSAVY AFIIAVFVYR DVPFKKIPKV
LLDSASMSAM LLYIITNAVL FSFLMTHENI PQIMADWILG HNLGVVSFLL VTNVLLLLAG
NVMEPSSIIL ILAPILFPVA MQLGIDPIHF GVLITVNMEV GMCHPPVGLN LYVASGITKM
GISELTLAVM PWLLAMVGFM LLVTYVPAIS LWLPRMLGY
|
|---|
| |