| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_1550 |
|---|
| Symbol | |
|---|
| ID | 5162787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | - |
|---|
| Start bp | 1805073 |
|---|
| End bp | 1806743 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640549049 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_001230321 |
|---|
| Protein GI | 148263615 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5002] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCGGC GACTTAGCAT TCGCAACAAA CTGGCTTTCG CGCTGTGGGG CGCGGCGCTG
CTGGCCTTCG CCGTGGCGAG CGCGGCGTTG GCGTTCTTTG CGAGCCTAAC GCTGGAACGT
CGAGCCCGGC AGATCATGGA GCCCTATGCG CAACTGGTTT CCGTCGGGGC GGAAGCGGCG
GTGGCTTTCG AGGACCCCGG ACGGGCACGG GAAATTCTCA ATACGTTACG GGCCAATCCG
CAAATTTCGG AGGCGGAAAT AGTTTTGGGG GACGGACGGT TGCTGGCCCG CTACAGCAGC
AGGTCCAACG CAACATTCAG GCACCATCCG CTCAAACCCG ATGGCGTTTA CCTGAATCAT
AACACCGCGG AGTTGGTGCA GAGCCTGCAA GACGGCGCGC ATTTGTACCT CGCCATGAGC
CTGGACGAGC TCAACCGGCA AACTCGAAAC GTCTTGCTGG TGTTTGCCGC AGGGGTAGTC
GTCTTGCTGG TGTCCATCAC CCTGGGCCTG CTGGCAGCTC TGCAACGAAC CATCGTCCGC
CCCATCTCCA CGCTGGCCGA GACCGTCGAG CAGGTTCGCA TCCGAGGCGA CTACCACCAG
CGCGTACCGG CCTCCGGCGC CGACGAGGTG GCCCGGCTTG GCCAGAGCTT CAACGCCATG
ATGGGGGCGA TCCAGGAGCA GGACAATGAT TTGCGCCGAC TCACCCTCTT CCAGCGGACG
CTTTTGGACA GCGCAGCCCA CGGCATAATC TCTACGGCTC CCGATGGGGT TGTCAGCAGC
TTCAATCCTG CCGCAGAGCG GTTGCTGGGT TACACGGCCG ACGAAGTGGT CGACAAACAG
ACACCGGCGT GCTGGCACGA TCCGGAAGAG ATGGCGCGGC GCGCCCTTCA GTTGTCCGAA
GAACTGGGCG AAACGATCTC GCCGGGATTC GATGTGTTTG CGGCCCGCCC CCGGCGTAAC
CTGCCCGAGG AAAACGAGTG GACCTTCATT CGCAAGGACG GGGCGTGCGT GCCGGTGCAT
CTGTCCGTGA CCGCGCTGCG AGGTGAGAGC GACCGGATCA GGGGATTCGT CGGGCTGACC
TATGATCTCA CCGAGCGCAA ACGGGCGGAG GAGGAACGAC GGGAAAGCGA GGCAAAGTAC
CGCCGCATCG TAGACACGGC CATCGAGGGG ATCTGGGTGC TCGGGCCGGA CACCATGACC
ACCTTCGCCA ATGCCAGGAT GGCCGAAATG CTCGGCTATT CCGGCGAGGA GATGATCGGC
CGGCCGTTGA CCGACTTCAT GTTCGAGGAG GATGCGCCCG ATCATCTGAG AAAAATGGAG
AATCATCGCC AGGGCCTCTC GGAGAATTAC GAACGCCGAT TCCGCCGTAA AAACGGAGAG
ACGGTATGGA CTCTTACTTC TGCTACCCCT ATCTTTGATG ATGAGCATCA TTTCCAGGGC
TCCTTTGCGA TGTTCACCGA CATCTCCGAA AAGAAGCTGG CAGAGGAAGA GCTTCGCAGG
CTCAAGGACG AACTCGAACA GCGGGTGCAG GAGCGGACCG CCGAGCTTGC GGCCAAGAAC
GCTGAACTGG AGCGGATGAA CCGGATCTTC GTCGGCCGGG AGCTGCGGAT GGTGGAGCTG
AAGGAAAGGA TCGGGGAGCT GGAGAAAAAG CTCGGAGAGA GAACGCCATA G
|
|---|
| Protein sequence | MFRRLSIRNK LAFALWGAAL LAFAVASAAL AFFASLTLER RARQIMEPYA QLVSVGAEAA
VAFEDPGRAR EILNTLRANP QISEAEIVLG DGRLLARYSS RSNATFRHHP LKPDGVYLNH
NTAELVQSLQ DGAHLYLAMS LDELNRQTRN VLLVFAAGVV VLLVSITLGL LAALQRTIVR
PISTLAETVE QVRIRGDYHQ RVPASGADEV ARLGQSFNAM MGAIQEQDND LRRLTLFQRT
LLDSAAHGII STAPDGVVSS FNPAAERLLG YTADEVVDKQ TPACWHDPEE MARRALQLSE
ELGETISPGF DVFAARPRRN LPEENEWTFI RKDGACVPVH LSVTALRGES DRIRGFVGLT
YDLTERKRAE EERRESEAKY RRIVDTAIEG IWVLGPDTMT TFANARMAEM LGYSGEEMIG
RPLTDFMFEE DAPDHLRKME NHRQGLSENY ERRFRRKNGE TVWTLTSATP IFDDEHHFQG
SFAMFTDISE KKLAEEELRR LKDELEQRVQ ERTAELAAKN AELERMNRIF VGRELRMVEL
KERIGELEKK LGERTP
|
|---|
| |