| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_1158 |
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| Symbol | |
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| ID | 5164723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter uraniireducens Rf4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009483 |
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| Strand | + |
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| Start bp | 1357708 |
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| End bp | 1362261 |
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| Gene Length | 4554 bp |
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| Protein Length | 1517 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640548662 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001229935 |
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| Protein GI | 148263229 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0480723 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCTAT CCGGATTAGC AACAGAAACT GGGTGGTCTT CCATTATGTC CTGGTCCGGA
CCGACGCTTA ATACAGGCTC TCCTACTGTC AGTGCCGGCT ATGACTGTCT GACCGGCGAT
TTCGATGGTG ACGGAAAAAC CGATCTGACC TGCTGGGGCG GAAGCAGTAC TTGGTATATG
GCGTTATCTT CAACAAGAAC CGGCGCCGGA TGGCAGACCC AGAACTGGGC TGGCCCAACG
TTAACATTTT CGAACGTAGC TATTCTTGTG CCCGACAAAT GTATAACCGG CGATTTCAAT
GGCGACGGAA AGACAGCCCT GGCCTGCTTC GACAGCGGTG CATGGACATT GGCCTTATCC
ACTGGAAGAA GCTGGGAAGT TCCGAGCTGG AATGGGGGCC CGGCAATTAG TCCAAATCTA
TCCATCAGAG ATCAATGTAT TTGGGGCGAT TTCAACGGTG ATGGGGTAAC CGACGCGGCC
TGCTATACCG GGGCATCGCC TTATAACTGG AATATGACAC TGTCAATCTC AAACGCATGG
ATGCATCAGG ATTTGGAAGG TCCAATACTG CAGAACTCCC ATGTCGGCTA TCAGTGTCTG
ACCGGCGACT TCAACGGCGA CGGGAAAACC GACTTTGCCT GCCTCGATAA CTATGGTTCC
GGCAGCGGTG GAACCTGGAA TGTGGCATTA TCATATGGAA CCGGCTGGTA TCAAAAGTAT
TTGCAGTGGG AGGGTCCGGC ACCAAAACCA GATGTCCCCG TCGGCAGGCA GTGCACGGTC
GGCGATTTCG ACGGTAACGG GAAAACAGAC GTGGCGTGCT ATTCAGGCAT CGGCGGAGCT
TGGAATGTGG CTCTGTCATA CGACGATCAT TACTGGACAA CCGACTTACT CACCTCGATT
TACAACGGTC TCGGCTCAAA AACCGACATC GAATACTGGC CTTCAACAGC TAGTGATCCG
AATATTCAGC TTCCATGGCT GGACCATCAT AATCCCCGCC TTCCCTTTCC TGTCCATACA
GTCCACTCCG TAACGACGTG CGACAACTAC ACAAGTTCAA GCTGTGTCGG CAATTCATCC
GTGACAAACT ACAGTTTTGC CGGCGGGTTC TATCAAATCT ACGAACACGA CTTTCGAGGG
TTCAATTATG CGAAGGTCAC CGGCCCTGCG GGGCCGGACG GTGAACAGAA AATAGTCGAG
ACATGGTTCC ACCAGGGAGA CGACTTGGCT GTTGATGCGA ATGATCCTGG CGCGCTATAT
GATGACACGA AGGGGAAACC GTACCGTACC CGCGTCTCAG GAATTGCGAA TGGACAGGCG
CTCGCAACGT ACTCTGAGGT GGAGACAACC TATACTACCG TGGCTGATGC CTATCATGTA
GCCCCAGGCC AGATAGACAT ATACTGCTGC GCAGATGGCG TCTCAGGTGC ATGTAAGGGC
AGCACCAATG CCCGACATAC GCAGACTTCT TACACCTATG ATCAATACGG CAACGTGAAG
CGTGAAAACC AATACGGCGA CGTAAGCGAC CCAACCGATG ACCGCACTGT TCTCAGAGGT
TACGTCCAAA ATCAAGACGC CTGGATCGTG GGCCTTCTCT CCAGTGAAAC CGTTTATCAA
GGCATTGGTC TGCAAACTCC GGTTTCCTCC ACAAATTATG ACTATGACGG GGCTACCGAT
TGCTCGACTT ATTCGCCGAC CACGTCACCG GTGAAGGGCA ACCTCACCCG TGCCGTCCGT
TGGTATAATG GGGGGACGAA CACGGAGACC TGGACAAGAT ATGACGGTTA CGGCAACCCA
GTTTGCAGCA AGGATGCAAA TGACAATATC ACCAGAGTAA GCTACGACAA CACTTTTACT
TTCCCCAAAA TAAGCACCAA TCCCTTGGAA CAGCCGACAA CCACCCAGTA TTACGGCGTG
GATGGTGTAC CTGCGGATTA TGGACTCTAT GGCCAGATAA AGAGCATCAC TGACCCTAAC
AACGCTGTGA CTTCTTATGA ATATGATCGT TTCGGCAGAA GAACCAAAGC AAACAGGCCG
AACTTCGAAT GGACGGAGTG GAGGTATAAT AGTTTCGGTA CGGTCGGCTA TCAGCATGTG
CGGGTCAATA CCTCCGCCGG CTTCTGGTCT GAGGATTATT TTGACGGTCT GGGGCGGACG
TTCAAGGAAA GGAAGAGTGG GCCGGATGCG AAGACCATTG TTGCCGACAC CCGGTATGAC
AGACGCGGAG CCGTAGCGCA GGCGTCGCTC CCCTATTTCG AAGGAACTGA GACACCCAGG
TACAAGTTGT TCACCTACGA TCCGATGGGC CGCGTAACAC AGGCGACCAG CCCTGACCCG
AACATTCGGA TATTGTCCTG CTTTGATGAA GGGGTTATGG TGACCATCGA CCCCAACAAC
CACCGCAAGC GGGAGAGCAG GGACGTTTAC GGCCGCCTCG TGAAGGTGGA GGAATACACC
GGGACCTATG CCGCCTGTTC GACGGAGGCA GGGACCCCGT ATGCAACTAC CAGCTACAGT
TACGACGTGC TGGGGAACCT CCGTTTCGTG ACCGACACCA AGGGGAACCA GACCGAGATG
CGCTACGACA CCCTCGGTCG TAAATACTAC ATGAAAGACC CTGACATGGG TGCGTGGAGC
TATGGCTACG CCGCAAACGG CAACCTGACT GCCCAAACAG ATGCCGATAG CCAGACCATC
CGGTTCACCT ACGACCCGTT GAACAGGATC ACCCTTAAGG ACTACCCCAG CGGCACAGAC
GTCGTCTATA CCTATGACGA ATCATTTTCC TCAAACCCCC TGGGTCGCCT CACCACCATG
ACCGACGAGT CGGGAAACAC TAAATATTTC TACGACTCGT TAGGGAGGAT TACAAAAACA
GTTAAGACAG TGGATGGGAA AAGCTATACG ATCGAAGTTG GGTACACAAA GTTCGACAGG
ATCTGGTACA TTAATTACCC GGACACTGAG CAAGTCCTCT ACGAATATGA CACGGGCGGA
AACATCTACA AGGTGGGTAA CTACGCCACT TTTACCAATT ACAACGCCCT CGGTCAGCCG
GGCTCCCTCA ACTTCGGCAA CGGCGTGAGC ACCATTTATC AGTACTATCC CCTCAACAAC
CGCCTTTACT CAATCACCAC CAACAGCCCG ACCCAGGGCC TCATCAACCT TTCCTATGGC
TACGACAATC AGGGAAACAT CACCAGCATC ACCGATCACC TCAACGCGTC CATCCCGCAC
AACTTCACTG GCAGAAGCTT CACCCTCTAT CCAGGCAAGG CTCACGCCTA CGGCATCACC
GGCACAGGTT TCCAGTACGG CCCCAGCGGG AACATGACCA ACAACGGTCA GTACAGCATC
CTCTACACCT ACGACAACAT GCCCCGTTCC ATAGGGGGGG CGGTAAGCTA CGTCTACGAC
GGCAACGGAA GCAGGGTGAA GAAGATCACC CCTGCAACCA CAAGGACTTA CTTGGATAAG
TTCTATGAGT GCGTTGGAGA TGTCTGCGGC AAATACATAT TTGCCGGTAA TACCAGGATT
GTGCTGAAGA GTTCCTTGGG GACCTATTAC TACCACCAGG ACCACCTGGG GAGCACCGTT
GCAGCGACCG ACACGGGCGG CAACAAGGCG GAAAACATCG CCTATTATCC CTTCGGTGAA
AGCAGGTCGG ATACCGGCAG CACTGGGGTG ATCCACAAAT ACACCTCGCA GGAGCTGGAC
TATGAGACAG GGCTCTACAA CTACAACGCA CGGCTGTATT ATCCGGAGAT CGGGAGGTTT
ATTACTGCGG ATACGATTGT GCCTGATTAT GCGAATCCGC AGAGTCTGAA CAGGTACGCT
TATGTTCAAA ATAATCCTAT GAATTATGTG GATCCAACTG GTCATGAAGA TATTTATATT
CTTAGAGATG TTTTTGAATT GTCGAATATA CAAACAGGTC CTTCACTAGC TGATACCTTT
ATCGAAGATT TGCCAGGGGA TGCCAACGGA TTATATTTGC CATATCCGTA TTTAGGTGAA
GTCAATACGG GGACACCTTT CCTCAATTCA GCTGTAAATG GGGTTATCTC AGACTTCTCA
ACAGCCGCTT ATTATGGAAA TATTACTTAT AGTATTCTCG GCTTAAATAA TGTCAATCTA
CAAGATCTGA GCAGGGCCAA TGACTACCTA ACCGCTGGGT CTCTAGCACT CATGCTATTT
CCTCCTACAG CTCCTTTTGG TGCGGCCGCG CTCACAACAA CTGGTTTAGT TGGCGTAAGT
TTAGGCGTTA CGGAGGGTAT TATAACAAGT AGTGCCAATA AAATATTATC AAGTGCGGCT
GAGTTCAGCA TAGGGATGGG AGCAGGAAGA TTGGCAAGGA GAGTAGCTGG CCTAACTGCT
GTTAAATTCA ATTTTAAGGC GAGCAGATAC TATTCAGAGG CAACAGGTAG ATTCGTAAGA
ACTAGTACAG GTCTAAACAG CTCCCAATTA AAAGAAGGAG CAGGGGCAAT TTCTTCAATA
CCGTTCAAGC TGTCTCCCAA TAATGACCCT TCTCAAGCAG GAGGTAGGCA ATAG
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| Protein sequence | MALSGLATET GWSSIMSWSG PTLNTGSPTV SAGYDCLTGD FDGDGKTDLT CWGGSSTWYM
ALSSTRTGAG WQTQNWAGPT LTFSNVAILV PDKCITGDFN GDGKTALACF DSGAWTLALS
TGRSWEVPSW NGGPAISPNL SIRDQCIWGD FNGDGVTDAA CYTGASPYNW NMTLSISNAW
MHQDLEGPIL QNSHVGYQCL TGDFNGDGKT DFACLDNYGS GSGGTWNVAL SYGTGWYQKY
LQWEGPAPKP DVPVGRQCTV GDFDGNGKTD VACYSGIGGA WNVALSYDDH YWTTDLLTSI
YNGLGSKTDI EYWPSTASDP NIQLPWLDHH NPRLPFPVHT VHSVTTCDNY TSSSCVGNSS
VTNYSFAGGF YQIYEHDFRG FNYAKVTGPA GPDGEQKIVE TWFHQGDDLA VDANDPGALY
DDTKGKPYRT RVSGIANGQA LATYSEVETT YTTVADAYHV APGQIDIYCC ADGVSGACKG
STNARHTQTS YTYDQYGNVK RENQYGDVSD PTDDRTVLRG YVQNQDAWIV GLLSSETVYQ
GIGLQTPVSS TNYDYDGATD CSTYSPTTSP VKGNLTRAVR WYNGGTNTET WTRYDGYGNP
VCSKDANDNI TRVSYDNTFT FPKISTNPLE QPTTTQYYGV DGVPADYGLY GQIKSITDPN
NAVTSYEYDR FGRRTKANRP NFEWTEWRYN SFGTVGYQHV RVNTSAGFWS EDYFDGLGRT
FKERKSGPDA KTIVADTRYD RRGAVAQASL PYFEGTETPR YKLFTYDPMG RVTQATSPDP
NIRILSCFDE GVMVTIDPNN HRKRESRDVY GRLVKVEEYT GTYAACSTEA GTPYATTSYS
YDVLGNLRFV TDTKGNQTEM RYDTLGRKYY MKDPDMGAWS YGYAANGNLT AQTDADSQTI
RFTYDPLNRI TLKDYPSGTD VVYTYDESFS SNPLGRLTTM TDESGNTKYF YDSLGRITKT
VKTVDGKSYT IEVGYTKFDR IWYINYPDTE QVLYEYDTGG NIYKVGNYAT FTNYNALGQP
GSLNFGNGVS TIYQYYPLNN RLYSITTNSP TQGLINLSYG YDNQGNITSI TDHLNASIPH
NFTGRSFTLY PGKAHAYGIT GTGFQYGPSG NMTNNGQYSI LYTYDNMPRS IGGAVSYVYD
GNGSRVKKIT PATTRTYLDK FYECVGDVCG KYIFAGNTRI VLKSSLGTYY YHQDHLGSTV
AATDTGGNKA ENIAYYPFGE SRSDTGSTGV IHKYTSQELD YETGLYNYNA RLYYPEIGRF
ITADTIVPDY ANPQSLNRYA YVQNNPMNYV DPTGHEDIYI LRDVFELSNI QTGPSLADTF
IEDLPGDANG LYLPYPYLGE VNTGTPFLNS AVNGVISDFS TAAYYGNITY SILGLNNVNL
QDLSRANDYL TAGSLALMLF PPTAPFGAAA LTTTGLVGVS LGVTEGIITS SANKILSSAA
EFSIGMGAGR LARRVAGLTA VKFNFKASRY YSEATGRFVR TSTGLNSSQL KEGAGAISSI
PFKLSPNNDP SQAGGRQ
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