| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_1020 |
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| Symbol | |
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| ID | 5164844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter uraniireducens Rf4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009483 |
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| Strand | - |
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| Start bp | 1213911 |
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| End bp | 1215950 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640548516 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_001229799 |
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| Protein GI | 148263093 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0111507 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAGCT GCAAACACCC CATATCACAT GCACTCACTT CTTTTAACGG CGAAACCGCC
GATGCCGCAA AAAAACAGCC GGTAAAGCCC GGCGCCAAGA TACACCACCT CCCCGCATCC
ATCTGGAAAA AGAAAGAGGG GGAGTCAAAG AGTCCTTTGG ACATCGCCAT TGAGAACAGC
CGCGACTTCT TCTTCCGCGA GCAGCTTCCC GACGGCTACT GGTGGGCCGA GCTGGAATCC
AACTGTACTA TTACCGCAGA ATATCTCATG CTCTACCACT TCATGGGGAT TGTGGACCAG
GAGCGTGAGC GGAAAATGGC CACCTATCTT CTCAGCAAGC AGACTGCCGA GGGATTCTGG
ACCATTTATT TCGGCGGACC CGGCGACCTG TCGACCACGG TAGAGGCTTA TTTTGCCCTG
AAACTGGCGG GCTACCCGGC TGATCACCCC GCCATGGCCA AGGCCCGCGC CTTTATATTG
GATAATGGCG GCATCATAAA ATGCAGGGTC TTTACTAAAA TATTTCTCGC CCTGTTCGGC
GAATTTGCCT GGTTCGGCGT GCCGTCCATG CCCATCGAGC TGATACTGCT TCCCAACTGG
GCCTATTTCA ACATGTACGA GCTTTCCAGC TGGTCACGGG CCACCATCAT TCCCCTCTCC
ATCGTCATGA CCGAGAGGCC GGTGCGCAAG CTGCCGCCGA GCTCCCGGGT CCAGGAGCTG
TATGTCAGGC CGCCGCGCCC CATCGACTAC ACCTTCTCCA AGGAAGACGG CATCATCACC
TGGAAGAACT TCTTTATCGG CGTCGATCAC ATCCTCAAGG TATACGAGAG CAACCCGATC
CGTCCCTTCA AGAAAAGGGC GCTGGCAACG GCGGAAAACT GGGTCCTCGA TCACCAGGAG
TCGACCGGTG ACTGGGGTGG CATACAGCCT GCCATGCTCA ACTCGGTGCT GGCCCTCCAT
TGCCTCGGCT ACGCCAACGA CCATCCGGCA GTGGCCAAGG GTCTGGAAGC ATTGGCAAAT
TTTTGCATCG AAACAGAAGA CAGCCTCGTG CTGCAATCCT GCATCTCTCC CATCTGGGAT
ACGGCGCTGG CTCTCAAGGC GCTCGTGGAT TCCGACGTCC CTACCGACCA TCCGGCACTG
GTAAAAGCCG CCCAGTGGCT TCTGGACAAG GAAGTACGCA AGCCGGGCGA CTGGAAGATC
AAGTGCCCCG AGTTGGAATC GGGCGGCTGG GCCTTTGAAT TCCTCAATGA CTGGTATCCT
GACGTGGACG ACTCGGGTTT TGTCATGATG GCGCTCAAGG ATGTGGCGGT AAAAGACCGT
AAATCCATGG ATGGCGCAAT TAAGCGCGGC ATCAACTGGT GCCTCGGCAT GCAAAGCAAA
AACGGCGGCT GGGGCGCTTT CGACAAAGAC AACACCAAGT ACCTGCTCAA CAAGATCCCT
TTTGCCGACC TGGAAGCGCT CATCGATCCC CCGACCGCCG ACCTGACCGG GAGAATGCTG
GAACTGATGG GAACTTTCGG TTATTCGAAG GATTATCCTG CGGCGGTTCG CGCCCTGGAA
TTCATCAAAA AAAACCAGGA GCCGGAAGGG AGCTGGTGGG GACGCTGGGG GGTGAACTAC
ATCTACGGCA CCTGGTCGGT CCTGGGCGGA CTCGCCGCCA TCGGCGAAGA CCTCAACCAG
CCCTATATCA GGAAGGCGGT CAACTGGCTC AAGTCGCGAC AGAACATGGA CGGCGGCTGG
GGTGAAACCT GCGAGTCTTA CCATGACACG TCGCTGGCCG GCATCGGCGA AAGCACCCCA
TCCCAGACCG GCTGGGCGCT TCTGTCATTG ATGTCGGCCG GAGAGGCGAA CTCTTCCACG
GTGGCGCGAG GCATCCAGTA CCTCATCGCA AACCAGAAAA GTGACGGCAC CTGGGATGAA
GAGCAGTACA CCGGCACCGG CTTCCCCAAG TTTTTCATGA TCAAGTACCA TATCTACCGC
AACTGTTTCC CCCTCACGGC ACTGGGCACC TACCGCAAGC TGACCGGAGG AATGGCGTAG
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| Protein sequence | MNSCKHPISH ALTSFNGETA DAAKKQPVKP GAKIHHLPAS IWKKKEGESK SPLDIAIENS
RDFFFREQLP DGYWWAELES NCTITAEYLM LYHFMGIVDQ ERERKMATYL LSKQTAEGFW
TIYFGGPGDL STTVEAYFAL KLAGYPADHP AMAKARAFIL DNGGIIKCRV FTKIFLALFG
EFAWFGVPSM PIELILLPNW AYFNMYELSS WSRATIIPLS IVMTERPVRK LPPSSRVQEL
YVRPPRPIDY TFSKEDGIIT WKNFFIGVDH ILKVYESNPI RPFKKRALAT AENWVLDHQE
STGDWGGIQP AMLNSVLALH CLGYANDHPA VAKGLEALAN FCIETEDSLV LQSCISPIWD
TALALKALVD SDVPTDHPAL VKAAQWLLDK EVRKPGDWKI KCPELESGGW AFEFLNDWYP
DVDDSGFVMM ALKDVAVKDR KSMDGAIKRG INWCLGMQSK NGGWGAFDKD NTKYLLNKIP
FADLEALIDP PTADLTGRML ELMGTFGYSK DYPAAVRALE FIKKNQEPEG SWWGRWGVNY
IYGTWSVLGG LAAIGEDLNQ PYIRKAVNWL KSRQNMDGGW GETCESYHDT SLAGIGESTP
SQTGWALLSL MSAGEANSST VARGIQYLIA NQKSDGTWDE EQYTGTGFPK FFMIKYHIYR
NCFPLTALGT YRKLTGGMA
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