Gene Gura_0683 details

Gene Information

• Locus tag: Gura_0683
• ID: 5165062
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter uraniireducens Rf4
• Kingdom: Bacteria
• Replicon accession: NC_009483
• Strand: -
• Start bp: 813614
• End bp: 815539
• Gene Length: 1926 bp
• Protein Length: 641 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 640548185
• Product: general secretion pathway protein D
• Protein accession: YP_001229468
• Protein GI: 148262762
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02517] general secretion pathway protein D

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00528314
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAATAAAC GCATTTCGCA TATCATCATT GCCCTGATCA TTTTTGCAGC AGTACCTTCC 
GTGGCGCTGG CCAAAGGAGT GGTGCTGAAT TTCAGCGACG TGGACATCTC CACCATGGTC 
AAGTTCATCA GTGACCTGAC CGGCAAGAAC TTCGTCATGG ATGACCGGGT AAAGGGGAAG 
ATCTCGGTCT TTTCACCGGC AAAACTCTCC ACCGAAGAAG CGTTCAACGT CTTTACCTCG 
GTGCTGGAAC TGAAGGGCTT CACCATCGTC CCCGCTGGGA AAGTCCTGAA GATAGTGCCG 
ACGGCCAATG CCAAGCAATC GGGAATGCGG ATTTATTCAG ACAAGGAGCG CAGCCCGGTT 
AACGAAGCAT ATGTGGCACG GGTCATCACC CTCGACCACA TCTCCAGCCA GGAAGCGGTG 
ACTTTCCTCC AGCCAATGGT CTCCAAAGAT GGCTATATCT CCTCGTTCGG CCCTACCAAC 
ATGCTGCTCC TCGTTGATTC GTCTCTGAAC ATCCAGAAGA TTCTGACGAT ACTGCAACTT 
ATCGATACCG ACCAGAAACG CGAGGGGGCT GAGCTCGTCT TCCTTAAAAA CGCTTCGGCG 
GAAAGCGTTG CCAACGTGGT AAAGGAATGG CTCGGGAGCA GGGATAAGGC GACAAAACCC 
GCCGGACAAC CGGCAGCAGG AGCCGGAGGG CTCATCCTTC CCGACGCCCG CCTCAACGCC 
CTGATCATAT TCGGCAATGC CAAAGACAAG GATGACATCA AGAAACTGAT TACCCTGATC 
GACGTTATCC CCCCGACTAC GAGCAGCAAG GTCAATGTCT ATTACCTTGA AAATGCCGAT 
GCGACCGAAG TTGCCAAGGT GTTGGATGGT GTGGTCAAGG GATCATCTGC GGCTGCTGCC 
CCCAGCCAAC CGGGAGCCGC AAACGCGCCG CAACAATCGC CTTTTGAAGG GGGCAAAATC 
AGCATCACCC CTGACAAGGC AACCAATTCA CTGGTCATCA TGGCGTCGCC CACCGATTAC 
CAGAACCTCA TCCAGGTGAT CCAGAAGCTC GACAAGCGCC GCCGCCAGGT CTTCGTCGAG 
GCTGTGATCG CCGAAGTCTC ACTCAGCAAG CTCAAGGATC TGGGCGTACA GTGGGGAGTT 
CTCGGCGGCG CATCCAACGG CACAGCAACC GCGGCAGGGC TCTACGACCC GCAGGATACC 
TTCACCACGC TCCTGACCGC CCTGGCAAAC CTGAAAAGTG CCGGCATAAC CATTCCCGAC 
CTGACGGGAA CAGCGCTGAA CTTTTCGGCG GTATTGAGGG CCCTTGACTC GCTGGGTGCA 
GTCAACGTCC TCTCCACCCC GACCATCATG ACCTCGGACA ATAAGGAAGC TGAGATCTTC 
GTCGGCGAAA ACGTCCCGTT CAAGGGGAAC GTCACCATTT CCAACACCAC CACCCCTTCA 
TTCCAATCCA TCGAGCGGAA GGATACCGGC ATAACCCTCA AGATCACCCC CCAGATCAGC 
GAAGGGGAAT ACGTAAAGCT CGACATTTAC CAGGAAATCT CCGCCATTTC AAACACTACG 
GTTTCCGGCG CGTCAGACCT GATAACCACC AAGCGGTCGG CGAAGACGTC GGTCGCCGTC 
AAGGACAAGG ATACCATGGT GATCGGCGGG CTGATCCAGG ACCGGGAGCA GGAAACCGTA 
AACAAGATAC CGCTCTTGGG CGACATCCCG TTTCTCGGCT GGCTCTTCAA GTTCAAGAAC 
ACCACACGGC AGAAGACGAA CCTGTTGATC GTCCTCACCC CCCGCATCGT CAGGGGGGCT 
CAGGAAGTAG CGGAGATCTC CGAAATCCAG AAACAGAAGT TCGGTAACGC GGTCAGTTCG 
GACAAACCGT TCAACCTGGA CAAAGAACTC ATGATCAAGC ATGATGCCGC GACTGGTGAC 
AGATGA 

 

Protein sequence

MNKRISHIII ALIIFAAVPS VALAKGVVLN FSDVDISTMV KFISDLTGKN FVMDDRVKGK 
ISVFSPAKLS TEEAFNVFTS VLELKGFTIV PAGKVLKIVP TANAKQSGMR IYSDKERSPV 
NEAYVARVIT LDHISSQEAV TFLQPMVSKD GYISSFGPTN MLLLVDSSLN IQKILTILQL 
IDTDQKREGA ELVFLKNASA ESVANVVKEW LGSRDKATKP AGQPAAGAGG LILPDARLNA 
LIIFGNAKDK DDIKKLITLI DVIPPTTSSK VNVYYLENAD ATEVAKVLDG VVKGSSAAAA 
PSQPGAANAP QQSPFEGGKI SITPDKATNS LVIMASPTDY QNLIQVIQKL DKRRRQVFVE 
AVIAEVSLSK LKDLGVQWGV LGGASNGTAT AAGLYDPQDT FTTLLTALAN LKSAGITIPD 
LTGTALNFSA VLRALDSLGA VNVLSTPTIM TSDNKEAEIF VGENVPFKGN VTISNTTTPS 
FQSIERKDTG ITLKITPQIS EGEYVKLDIY QEISAISNTT VSGASDLITT KRSAKTSVAV 
KDKDTMVIGG LIQDREQETV NKIPLLGDIP FLGWLFKFKN TTRQKTNLLI VLTPRIVRGA 
QEVAEISEIQ KQKFGNAVSS DKPFNLDKEL MIKHDAATGD R