Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gura_0140 |
Symbol | |
ID | 5167089 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter uraniireducens Rf4 |
Kingdom | Bacteria |
Replicon accession | NC_009483 |
Strand | + |
Start bp | 192799 |
End bp | 196278 |
Gene Length | 3480 bp |
Protein Length | 1159 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640547639 |
Product | transcription-repair coupling factor |
Protein accession | YP_001228929 |
Protein GI | 148262223 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00133746 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGCTA TCCTTACTCC TAATATAAAC CAGCTTGTCT CTGCCCTTTC CACTGCCGAG GCCTCTATCT CCATTGCCGG CCTCAAGGGC TCAGCACCGG CCTATGTCCT GTCGCGATTA CTGGTCGGGG TGAAAAAGAA CTTTCTTATC ATCACGTCAG ATGCAGAAAG CGCCGAAGAA CTGTGCCGCG AATTGCGCTT TTACAGCGGC CGGGAAGACG CCGTCCTGTA TTTCCCACCA TGGGACACCG CACCTTTTGA AAGCGCATCT CCCCATGCGG ACATTACCGG CCAGCGGCTG AATGTGTTGT TCCGGCTGAT GGACGGCAGG GCGGACGCGG TGGTGACATC ACTGCCGGCC GTGATGCAAA AGCTCCTGCC GCGCAAGACC CTTGGGGAGA TTTCCCAGTA CATCGTTGCC GGTGAAGAGG TGGCGCGGGA GAAACTGCTG GAAAAGCTGG TGAAGCTCGG TTATTCGCAC GTACCACTGG TGGAGGATCG GGGCGGCTTT TCCATTCGCG GCGGCATCCT CGACATCTTT CCCCCTGACC TGCCGGCGCC GGTCAGAATC GAGTTCTTCG GCGATTTTGT CGATACCATC CGCACCTTCG ACCCTGCCAC GCAACGCTCC CTTCAGCCAT TGGAAGAGCT GGTTCTCCTC CCTTCGCGGG AGGTGGTGAT CTCTGAGGAG GTCTTGAAGG AGTTCCCCCC GCGCCTGAAA AAACGCTGCG ATGCTATTGA GATTCCGGCG ACCCGCCGTC GGGACCTGCT GGAGCAGCTG CAGAACGCCA TATACCCGCC GGGGGTGGAA TACCTCCAGC CCCTGTTCCA TCCAGGACTT GAGACCCTTT TCGATTACGC CGGCAAAGAG CTGGTCAAGG TGATCTATGA CCCCGCAGCC ATGGCCGCTG CCCGGGAGCG CTTCATCGAA GAGCTGTCTG CTGCAGAGCA GAGGGCATTC GAGCGGGACG TCATCAGCTG CGAAACAGCA GAATTGTTTC TCGATGCAGA TAGCATAACG AAGATTCTTT CAGAGGGTCG TCGACTGGCG ATTCCTTTTC TGGAGGTGCG CGGCACCGGC GAGATCGGAG AAACCTTCCG CCTTGCGGTG CAGGATAACA GCGATCTCAA ACTTGAGGTC TCCAGCGATG GCGAGGGGGT GCTGAAACCC CTGGTGGAAA AGGTCCTCTC CTGGCTTGCG GCGAAGAACC AGGTGCTCAT GGCCTGTCAC CAGCGTGGTC AGGCCCAACG GCTCTATGAA ATCCTTTCCC ATTACGATCT CCCTCTCAAC ATCTCCGAGC GCGAGTTTCC GGCGGAGCTG GGGCGTAAAG ACAACCGGCT CGATATTCTT GTGGGAGACA TTTCCCGCGG TTTCCGCCTC CCGGAAGAGG GGTTGGTTGT CATTGCCGAG GAAGAGATCT TTGGCGTCAG GGTCAAGCGA CGCGGCCTTT CCGAGGCCCG GAAAAAACAG CTGCTCACCT CCCTCGCCGA ACTGAAGCCT GGCGACTACA TGGTGCATAT CGACTTCGGC GTCGGCATTT ACCGCGGTCT GCAGCATCTG ACCTTCGATC GGATGGAGGG GGATTTTCTC CTCCTGGAAT ACGCCGGTGC GGACAAGCTC TACCTGCCCG TCGATCGGAT CAACCTTGTT CAGCGCTATG TGGGTGCCGA AGGGGTCGAG CCCCATGTGG ACAAGCTGGG AGGCGCCGGC TGGGAGAAGA CCAAGGCCCG GGCCCGGGCC GCCATTCAGG AGATGGCGGG GGAACTGCTG AAGATTTACG CTGCGCGGCA GGTGGAGGAA GGGCATGCCT TCTCTCCCCA GGACGAACTC TACCAGGAAT TCGAGGCATC CTTTGCCTTC GAGGAGACAC CGGACCAGCA GGCGGCGATC GAAGACGTGC TGCACGATAT GGAGAGCAAG AGGCCGATGG ATCGCCTCGT CTGCGGCGAT GTGGGGTACG GCAAGACCGA AGTGGCCATG CGCGGCGCCT TCAAGGCGGT GATGGACGGC AAGCAGGTGG CGCTTCTGGT CCCGACGACG ATTCTTGCCC AGCAGCACAT GGAGACCTTT GCCGAGCGTT TCAAGGCGTA TCCGGTCAAG GTGGAGATGC TCTCCCGTTT CCGCTCGGCC AAGGAACAGA AGGCGATCCT CGAAGGGGTA AAAAAGGGGG AGGTCGACAT CATCATCGGC ACCCATCGCC TGTTGCAGAA GGATGTGGTC TTCAAGGACC TGGGCCTTCT CATCATCGAC GAAGAGCAGC GCTTCGGCGT GTCGCACAAG GAACGGCTGA AGCAATTCCG GGCTGTGGTG GACATCATGA CGCTCACCGC CACCCCGATC CCGCGTACCC TGTACATGTC GCTGATGGGG ATCCGCGACC TCTCCATCAT CGATACCCCG CCGGTCGATC GTCTCGCTAT CAAGACCTTC GTGGCGCGCT CTTCCGATGA GCTGATCCGC GAGGCAGTGC TGCGGGAGTT GCGCCGGGGC GGGCAGGTGT TCTTCGTCCA TAACCGGGTG CAGACCATCG GTGCCATGGC GGAGCATTTG CAGCAGATCG TCCCCGAGGC GCGCATTGCC GTGGGGCACG GCCAGATGGA CGAAAAGGAG CTGGAACGGG TGATGCTCGG CTTTATGCAT GGCGAAACCA ACTTGCTCCT CTGCACCACC ATCATCGAGT CGGGGCTCGA CATCCCGACT GCCAACACTC TGATCGTCAG CCGGGCCGAT ACTTTCGGTC TGTCCCAGCT CTACCAGTTG CGCGGCCGGG TGGGACGCTC CAAGCAGCGC GCCTACGCCT ATCTGCTCAT CCCAGGCGAA GGGGCCATCT CGGCCGATGC GCGGGAGAGG CTCAAGATCA TCCAGGAGCT TACCGAACTG GGCGCCGGCT TTCGCATCGC CACCCACGAC CTGGAGATCC GGGGCGCCGG TGATCTTCTC GGGGCGCGGC AGTCCGGGGA TATCGCCGCG GTAGGTTTTG AACTCTATAC GGAACTTCTT GAAGAGGCGA TCAGGCAGCT GAAGGGCGAG GAACTGGCCG AGCGGGTCGA GCCGGAGATC AAGCTGCGCA TCCCGGCGTT TGTCCCGGAG GATTATGTCC GCGAACCGAA CCAGCGGCTC ATTATCTACA AAAAGCTTTC CCAGGCGACA TCGGAGGAAG ATATCGGGGA AATCATGGCG GAGCTGGTCG ACCGCTTCGG CAAGTTGCCG CTGGCGGCTA CCTATCTCCT GGAAGTGATG CGGCTGCGCG TCACCCTGAA AGCCATGCTG GTCAAGGAGA TCGAGTTCGA TGGTAAACGG CTTGTCCTCT CTTTCCATCA GAAGACCCCC GTTCCACCCG ATACCATCAT CGCCCTGATC CGGCAACAGC CGAAAAAATA CCAGTTCACG CCCGACTTCC GCCTCTATGC CGAGCTGGCT GATACCTCGT TTGACGGCAT TCTCGGCGAG GCCAGAAATC TCTTGAAAAG GCTAGGCTGA
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Protein sequence | MTAILTPNIN QLVSALSTAE ASISIAGLKG SAPAYVLSRL LVGVKKNFLI ITSDAESAEE LCRELRFYSG REDAVLYFPP WDTAPFESAS PHADITGQRL NVLFRLMDGR ADAVVTSLPA VMQKLLPRKT LGEISQYIVA GEEVAREKLL EKLVKLGYSH VPLVEDRGGF SIRGGILDIF PPDLPAPVRI EFFGDFVDTI RTFDPATQRS LQPLEELVLL PSREVVISEE VLKEFPPRLK KRCDAIEIPA TRRRDLLEQL QNAIYPPGVE YLQPLFHPGL ETLFDYAGKE LVKVIYDPAA MAAARERFIE ELSAAEQRAF ERDVISCETA ELFLDADSIT KILSEGRRLA IPFLEVRGTG EIGETFRLAV QDNSDLKLEV SSDGEGVLKP LVEKVLSWLA AKNQVLMACH QRGQAQRLYE ILSHYDLPLN ISEREFPAEL GRKDNRLDIL VGDISRGFRL PEEGLVVIAE EEIFGVRVKR RGLSEARKKQ LLTSLAELKP GDYMVHIDFG VGIYRGLQHL TFDRMEGDFL LLEYAGADKL YLPVDRINLV QRYVGAEGVE PHVDKLGGAG WEKTKARARA AIQEMAGELL KIYAARQVEE GHAFSPQDEL YQEFEASFAF EETPDQQAAI EDVLHDMESK RPMDRLVCGD VGYGKTEVAM RGAFKAVMDG KQVALLVPTT ILAQQHMETF AERFKAYPVK VEMLSRFRSA KEQKAILEGV KKGEVDIIIG THRLLQKDVV FKDLGLLIID EEQRFGVSHK ERLKQFRAVV DIMTLTATPI PRTLYMSLMG IRDLSIIDTP PVDRLAIKTF VARSSDELIR EAVLRELRRG GQVFFVHNRV QTIGAMAEHL QQIVPEARIA VGHGQMDEKE LERVMLGFMH GETNLLLCTT IIESGLDIPT ANTLIVSRAD TFGLSQLYQL RGRVGRSKQR AYAYLLIPGE GAISADARER LKIIQELTEL GAGFRIATHD LEIRGAGDLL GARQSGDIAA VGFELYTELL EEAIRQLKGE ELAERVEPEI KLRIPAFVPE DYVREPNQRL IIYKKLSQAT SEEDIGEIMA ELVDRFGKLP LAATYLLEVM RLRVTLKAML VKEIEFDGKR LVLSFHQKTP VPPDTIIALI RQQPKKYQFT PDFRLYAELA DTSFDGILGE ARNLLKRLG
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