| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_p0255 |
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| Symbol | avhB4 |
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| ID | 5148538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009475 |
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| Strand | - |
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| Start bp | 187001 |
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| End bp | 189367 |
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| Gene Length | 2367 bp |
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| Protein Length | 788 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640539132 |
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| Product | Type IV secretory pathway AvhB4 protein |
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| Protein accession | YP_001220565 |
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| Protein GI | 148241064 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.849698 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTAACG CAGCGCTCAA GACCCGGGAG ATCGGGCCCG AAGTCTACCT CCCGTTCGGC
CGACATGTCA CCGATACCGT GATCAGTCTC ACGACCAGGG CCATGCTCAC AGTGATCCGG
CTCGACGGCA CCTCGTTCGA GACCGCCGAG ACGGCGGATC TGAACGATCT TCACGCCAAA
CTGAACCTCA CTCTACGCAA TGTTGCCGAT CCGCGGCTGG CGCTATGGAC CCATCTGGTG
CGGCGCCGGA CGTCAGATTA TCCGGACGGT GCATTCCGAT CGCCATTTGC AGCCTCGCTT
GACGCGCAAT ATCGCGACCG GCTTCGCAAA GCAGCGCTGT TTCGCAACGA TCTCTACGTG
ACGCTGGTTT GTCATCCCGG TCGCGCGCCC GCCGATGCGG CAGCCGCGTT CTTCCGGCGG
CTTGGCCGGA GCGCTGCGGC TTCTCTCGAG GTCGACAGCG ACGCCTTGAA GCGGCTCAAC
GATGCCACGC GAGATATGGT CGCGGCGTTA GAGCGCTACG GGGCCCATGC TCTCGGATTG
GCTGAGCGCG ACGGCATCGT ATTCTCGGAG CCAATGGAGC TGTTCCACGC CGTGGCCTCC
GGCGAGTGGA CGTCAATGCC GTTGCCGCAG GGGCCGATCG GCCCTGCACT CTATTCAAAC
CGTGTCATTT TCGGCCGCGA AGCCATCGAA ACCCGCAGCG CGGGTGGCTC GCGCTTCGCT
GGCATGTTTG GACTCAAGGA ATATCCGGCG TCCACTAAGC CTGGCCTGTT GAACGCGCTG
CTTTCTGCGC CTTTCGAACT TATCCTCACG CAATCCTTCG CGTTCTTGTC CAAATCTGAT
GCCAAGACGG TGCTGACGCG CAAGCAGAAC CAGCTGGTCT CGGCTCAGGA TCCGGCGGCC
TCGCAGATCG ACGAGCTCGC TGACGCCCTC GACGATCTCG AATCCAACAG GTTCGCGCTT
GGAGACCATC ATCTCTCGTT GTTGATCTAC GCCGAGACGC CTTCGCAGCT CCAGGACCAC
ATGAGCGTGG CGCGACGCGT CCTGGCGGAT GCGGGTGCCG TGGTGGCGCG CGAAGATCTC
GGCCTTGAAG CGGCCTATTG GGCGCAGCTT CCCGGGCTGT TCAAGTATCG GGCACGAACT
GGGGCGATCA GCTCGCGGAA TTTCGCGGCA TTCTCCCCGT TCCATACCTA TCCCACAGGA
CAGCCTTCCG GCAACCATTG GGGACCGGCG GTCGCGATGC TCAAGACCGC GTCCGGCTCT
CCGTTCTATT TCTCGTTCCA TCACGGCGAC CTCGGCAACA CGTTCATCTG TGGCCCCTCC
GGGTCGGGCA AGACCGTCGT GCAGAACTTC CTGCTGTCGC AGGCCGAGCG GCTCGGCGCC
ACTTACGTCT TCTTCGACAA GGACCGCGGC GCCGAGATTT TCGTCCGTGC CGTCGGCGGC
ACCTATCTGA CGCTCCACAA CGGTATTGCG ACCGGCTGTG CGCCGCTCAA GGCGCTGGAG
CTAACGCCAG CCAATCTTTC CTTCCTGGGC GCTCTTATCC GGAAGCTCGT TACGCCAGAC
AACCGTCCGC TGACCGTATC CGAGGAGGAG CGGATCGATT CCGGATTGCG AGCCCTTGTT
CACCTGCGGC AGGAGGAACG CTCGTTTGGG GCGCTGCGGG CTTTTCTTGG TCAACAGGAC
CGCGAGGGGA TCGGCGCCCG GTTGGAGCGA TGGTGCCGGG GCGCCCCCTT CGGCTGGGTG
CTGGATGGCG AGCAGGATGC CATCGGGCTA GATGCCCGGT TCGTCGGCTT CGACATGACC
GATCTCTTGG ATCATCCCAG CGTTCGCACG CCGCTCATGA TGTATCTGTT CCACCGCGTC
GAGCGCCTGA TCGACGGGCG GCGCCTGATC ATCGACATCG ACGAGTTCTG GAAGGCGCTT
GGCGACGGGG CATTTCGGGA TCTCGCCAAC AACAAGCTCA AGACCATCCG CAAGCAGAAT
GGCGTCATGG TATTCGGCAC GCAGTCGCCG CGCGACGCGC TGGCTTCCCC GATCGCACAC
ACCATTGTCG AGCAGTGCCC GACGCAGATC TTCCTGCCTA ACGCGCGGGG AACACGCTCG
GACTATGTCG ACGGCTTCCA TCTGACCGAC ACTGAATTCC GCCTGATCAA GGAGGAGCTC
ACGCCTGAAA GCCGGCGGTT CCTGATCAAG CAAGGCCATA ACTCAGTGGT CGCAGAACTT
GATCTCGGCG GCTTCAACGA TGCACTCGCC GTGTTGTCCG GACGGACCGA GACGGTCGAA
CTGCTCGACC GCATTCGGGC AGAGGTTGGC GACGATCCAG CGCAATGGCT GCCGGTATTT
CACGCGGAAC GGGGGACAAT CCGATGA
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| Protein sequence | MRNAALKTRE IGPEVYLPFG RHVTDTVISL TTRAMLTVIR LDGTSFETAE TADLNDLHAK
LNLTLRNVAD PRLALWTHLV RRRTSDYPDG AFRSPFAASL DAQYRDRLRK AALFRNDLYV
TLVCHPGRAP ADAAAAFFRR LGRSAAASLE VDSDALKRLN DATRDMVAAL ERYGAHALGL
AERDGIVFSE PMELFHAVAS GEWTSMPLPQ GPIGPALYSN RVIFGREAIE TRSAGGSRFA
GMFGLKEYPA STKPGLLNAL LSAPFELILT QSFAFLSKSD AKTVLTRKQN QLVSAQDPAA
SQIDELADAL DDLESNRFAL GDHHLSLLIY AETPSQLQDH MSVARRVLAD AGAVVAREDL
GLEAAYWAQL PGLFKYRART GAISSRNFAA FSPFHTYPTG QPSGNHWGPA VAMLKTASGS
PFYFSFHHGD LGNTFICGPS GSGKTVVQNF LLSQAERLGA TYVFFDKDRG AEIFVRAVGG
TYLTLHNGIA TGCAPLKALE LTPANLSFLG ALIRKLVTPD NRPLTVSEEE RIDSGLRALV
HLRQEERSFG ALRAFLGQQD REGIGARLER WCRGAPFGWV LDGEQDAIGL DARFVGFDMT
DLLDHPSVRT PLMMYLFHRV ERLIDGRRLI IDIDEFWKAL GDGAFRDLAN NKLKTIRKQN
GVMVFGTQSP RDALASPIAH TIVEQCPTQI FLPNARGTRS DYVDGFHLTD TEFRLIKEEL
TPESRRFLIK QGHNSVVAEL DLGGFNDALA VLSGRTETVE LLDRIRAEVG DDPAQWLPVF
HAERGTIR
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