Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_p0254 |
Symbol | avhB5 |
ID | 5148671 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009475 |
Strand | - |
Start bp | 186282 |
End bp | 187004 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640539131 |
Product | Type IV secretory pathway AvhB5 protein |
Protein accession | YP_001220564 |
Protein GI | 148241063 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02791] P-type DNA transfer protein VirB5 |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGTTC AACGTATGCC GGGGATTCTC CCGTTCGTGC CGGTCATGAT CTTCCTGATG GCATCACCTG CAGGAGCGGA GATTGTGTTC GATCCTAGCG TCTATGCGCG GCAATTTGAG CAACTGACGG AGCTGAAGAA GCAGGTCGAT ACCCTGACGT CCCAGCTCAA GGTGGCGCAA GATCAATTGA ACCAGGCCAA GCAGCTCTAT GACAGCTTCA ACAAGCGGAC CAACGCCAAC GACATCGGCG CGCTGCTAAA CACGCCCCAG TTCCGGAAAG TCCTGCCCCA ACAGTTCTCT GACATCGAAC GTCTCGTGGC GGGGCAGGGT GGCGGCAACT TCGCCGACGC GATGAACCAG TACCTTTCGC AGAACCGCGC GTATGCCGGC AACAGCGGCA ATTCGTATTA CCAGAGCGAG CTCGACCGGA TCGCGCGGCA GACCGGCGCC AAGCACTCCA TGGGCCAGGC GGTCTACGAC ACCGCCTCGC AGCGTATCGA TGCGCTCGAA GAATTGAGAA CCCGCATCAG CTCTGCGACC GACGTCAAGG AGACTCTCGA TTTGTCAGCG CGGCTGCAGG CCGAACAGGC GCTGCTGCAG AACGATGTGC TCCGGATGCA GGGTCTTGCG ATGATCCAGC AGGCCCGCAC CGACATGGAC GGACAGCGGG AGCGCGAAAA ACAACAACAA CTGATTGATG AAATGAAGGC GGCGCTGGAA TGA
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Protein sequence | MTVQRMPGIL PFVPVMIFLM ASPAGAEIVF DPSVYARQFE QLTELKKQVD TLTSQLKVAQ DQLNQAKQLY DSFNKRTNAN DIGALLNTPQ FRKVLPQQFS DIERLVAGQG GGNFADAMNQ YLSQNRAYAG NSGNSYYQSE LDRIARQTGA KHSMGQAVYD TASQRIDALE ELRTRISSAT DVKETLDLSA RLQAEQALLQ NDVLRMQGLA MIQQARTDMD GQREREKQQQ LIDEMKAALE
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