Gene BBta_p0247 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_p0247 
Symbol 
ID5148742 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009475 
Strand
Start bp179075 
End bp181021 
Gene Length1947 bp 
Protein Length648 aa 
Translation table11 
GC content60% 
IMG OID640539123 
Productputative type IV secretory pathway protein VirD4 
Protein accessionYP_001220556 
Protein GI148241055 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3505] Type IV secretory pathway, VirD4 components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.865084 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCCGC TCGCAAACGC GACCACCTCA GTTAGGACAG CGCAGGGCCT CGCGGTCGCG 
CTCGCTGCTT GCGCGGTATT CCTATTGGTC GCCTCAAACG TCCTGCTGCT GGGGCTCAGG
CTTCACGATG GTGGCCTGCA CTGGTCAGAG ATCGCCACCG GCTGGTCCCG CTACGGCGCT
GACCCACGTT TCGACCGCTG GCTAACCCTG TCAACACTCG TCGGCGTGGT CGTCGTTTTC
GGCCTGCTCG GTGCTATCTT TCGGCACCGT CCTTCCCCAC TTCACGGCAG CGCGCGTTTC
GCCTCCGAGC GGGAGATCAA GGCCGCTGGC CTGCGATCTA AGCAAGGCGT GCTACTTGGA
CGAAAGGACG GTGCACTGCT CTGCTTCGGC GGATCGGAAC ACGTCCTGGT CTACGCTCCG
ACTAGGGCAG GGAAGGGGGT CGGCTACGTC ATTCCGAACC TGCTGAATTG GCCAGATTCG
GTGGTCGTTC TGGATGTGAA GAAGGAAAAC TGGGATCGCT CCGCAGGATT TCGCGCAGCC
CACGGGCAGG AGGTCTATCT GTTCGATCCG CTAGAGGAAC ACGGTTGCAC CGCACGCTAC
AATCCGCTTG GCTACGTGCG CAGCGATCCC GCGGACCTCT ATGACGATCT GCAGCGCATC
GCCGTCATGC TGTTTCCGGC CGAGACCCGG GGCGATCCGT TCTGGTTCGA GGCAGCACGC
TCGGCCTTCG TGGCGATTGG CGGCTATGTC GCGGAAACGC CGGGATTGTC ATTGACGATC
GGCGAGATCC TGCACCAGCT GTCCGCTGCC CCCGATCTCA AGGCACATTT TGAGAAGATC
ATCGCCGCTC GCAAGTTTGG CTCTTCGCCA TTGTCGCGGC ATTGCATTGC CGCATTGAAT
GATTTCCTCG CCGCGTCCGA AAACACGATG AACTCGGTGC GTAAGACCGT CACGGCAAGG
CTTGGTCTCT GGCTCAACCC TCGGATCGAT GCTGCGACAA CGACCAACGA TTTCGATCTG
CGGCACCTGC GGCAAAAGCC GATGTCGATC TATCTCGGCG TGACGCCTGA CAATCTCGAC
CGCATGGCGC CACTTCTGAA TCTGTTTTTC CAGCAGGTGG TCGATCTCAA TACCCGCGAG
CTGCCGGAAC AGAACCCCAA GCTCAATCGC AAGGTGCTGC TTTTGCTGGA TGAATTTCCG
GCGCTCGGCA ATGTCAACGT GCTGGCGAGA TCAGTGGCAT TCATTGCCGG TTATGGCATC
CGCCTGCTGA CCGTGATTCA GAGTCCGGCC CAGCTACGCG GAATCTACGG AATTGACACA
GCCCGCAACT TCATGACCAA CCACGCCGTC GAGGTGGTCT TTGCGCCGAA GGAACAGGAT
GTCGCCAATG AGCTTTCGGA GCGGATCGGT TACGACACCG TGAAAGCGCG CAGCCGCAGC
GGACCGAAAG GACTGGCGAT GCGCTCGACC AGCGAAACGA TTTCTGAACA CCGCCGCGCC
CTGATGCTGC CGCAGGAGCT GAAGCTACTT CCGAAAACCA AGGCATTCAT TCTCGGCACC
GGCATTCCGC CCATTATCGC TGACAAGATC GTCTATTACG AAGACAAGGC TTTCCTGCGG
CGTCTGTTGC CTGCGCCTAC CCCCGAAATG CCCAACGGTC GCTCGAATGC GTTGCTCGAC
GCCGAGATCA AAGAGCTTCG CTCCGCGGTC GCTGAGCTCC GGGCGGCATT TCGGTCTCGC
CCGATGACCG ACGAGGAGGT GGCCGATCCC TCCACAATCC CCGCCGACGC CTCCTTCGAT
TTTGGGGATG TGGACGTCGA TCTCGAAGGG CTCTCGGAAG ACGATATGAA AGCCTGGGTC
CTGAATTACA TCGACGCTCA AGCCATTCCG CCGTCGCGGC GGACCGGCCG CAAGCAGAAG
GGTGAGGGCC ATGAACGACG GGCATAA
 
Protein sequence
MTPLANATTS VRTAQGLAVA LAACAVFLLV ASNVLLLGLR LHDGGLHWSE IATGWSRYGA 
DPRFDRWLTL STLVGVVVVF GLLGAIFRHR PSPLHGSARF ASEREIKAAG LRSKQGVLLG
RKDGALLCFG GSEHVLVYAP TRAGKGVGYV IPNLLNWPDS VVVLDVKKEN WDRSAGFRAA
HGQEVYLFDP LEEHGCTARY NPLGYVRSDP ADLYDDLQRI AVMLFPAETR GDPFWFEAAR
SAFVAIGGYV AETPGLSLTI GEILHQLSAA PDLKAHFEKI IAARKFGSSP LSRHCIAALN
DFLAASENTM NSVRKTVTAR LGLWLNPRID AATTTNDFDL RHLRQKPMSI YLGVTPDNLD
RMAPLLNLFF QQVVDLNTRE LPEQNPKLNR KVLLLLDEFP ALGNVNVLAR SVAFIAGYGI
RLLTVIQSPA QLRGIYGIDT ARNFMTNHAV EVVFAPKEQD VANELSERIG YDTVKARSRS
GPKGLAMRST SETISEHRRA LMLPQELKLL PKTKAFILGT GIPPIIADKI VYYEDKAFLR
RLLPAPTPEM PNGRSNALLD AEIKELRSAV AELRAAFRSR PMTDEEVADP STIPADASFD
FGDVDVDLEG LSEDDMKAWV LNYIDAQAIP PSRRTGRKQK GEGHERRA