Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_p0247 |
Symbol | |
ID | 5148742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009475 |
Strand | - |
Start bp | 179075 |
End bp | 181021 |
Gene Length | 1947 bp |
Protein Length | 648 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640539123 |
Product | putative type IV secretory pathway protein VirD4 |
Protein accession | YP_001220556 |
Protein GI | 148241055 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.865084 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCCGC TCGCAAACGC GACCACCTCA GTTAGGACAG CGCAGGGCCT CGCGGTCGCG CTCGCTGCTT GCGCGGTATT CCTATTGGTC GCCTCAAACG TCCTGCTGCT GGGGCTCAGG CTTCACGATG GTGGCCTGCA CTGGTCAGAG ATCGCCACCG GCTGGTCCCG CTACGGCGCT GACCCACGTT TCGACCGCTG GCTAACCCTG TCAACACTCG TCGGCGTGGT CGTCGTTTTC GGCCTGCTCG GTGCTATCTT TCGGCACCGT CCTTCCCCAC TTCACGGCAG CGCGCGTTTC GCCTCCGAGC GGGAGATCAA GGCCGCTGGC CTGCGATCTA AGCAAGGCGT GCTACTTGGA CGAAAGGACG GTGCACTGCT CTGCTTCGGC GGATCGGAAC ACGTCCTGGT CTACGCTCCG ACTAGGGCAG GGAAGGGGGT CGGCTACGTC ATTCCGAACC TGCTGAATTG GCCAGATTCG GTGGTCGTTC TGGATGTGAA GAAGGAAAAC TGGGATCGCT CCGCAGGATT TCGCGCAGCC CACGGGCAGG AGGTCTATCT GTTCGATCCG CTAGAGGAAC ACGGTTGCAC CGCACGCTAC AATCCGCTTG GCTACGTGCG CAGCGATCCC GCGGACCTCT ATGACGATCT GCAGCGCATC GCCGTCATGC TGTTTCCGGC CGAGACCCGG GGCGATCCGT TCTGGTTCGA GGCAGCACGC TCGGCCTTCG TGGCGATTGG CGGCTATGTC GCGGAAACGC CGGGATTGTC ATTGACGATC GGCGAGATCC TGCACCAGCT GTCCGCTGCC CCCGATCTCA AGGCACATTT TGAGAAGATC ATCGCCGCTC GCAAGTTTGG CTCTTCGCCA TTGTCGCGGC ATTGCATTGC CGCATTGAAT GATTTCCTCG CCGCGTCCGA AAACACGATG AACTCGGTGC GTAAGACCGT CACGGCAAGG CTTGGTCTCT GGCTCAACCC TCGGATCGAT GCTGCGACAA CGACCAACGA TTTCGATCTG CGGCACCTGC GGCAAAAGCC GATGTCGATC TATCTCGGCG TGACGCCTGA CAATCTCGAC CGCATGGCGC CACTTCTGAA TCTGTTTTTC CAGCAGGTGG TCGATCTCAA TACCCGCGAG CTGCCGGAAC AGAACCCCAA GCTCAATCGC AAGGTGCTGC TTTTGCTGGA TGAATTTCCG GCGCTCGGCA ATGTCAACGT GCTGGCGAGA TCAGTGGCAT TCATTGCCGG TTATGGCATC CGCCTGCTGA CCGTGATTCA GAGTCCGGCC CAGCTACGCG GAATCTACGG AATTGACACA GCCCGCAACT TCATGACCAA CCACGCCGTC GAGGTGGTCT TTGCGCCGAA GGAACAGGAT GTCGCCAATG AGCTTTCGGA GCGGATCGGT TACGACACCG TGAAAGCGCG CAGCCGCAGC GGACCGAAAG GACTGGCGAT GCGCTCGACC AGCGAAACGA TTTCTGAACA CCGCCGCGCC CTGATGCTGC CGCAGGAGCT GAAGCTACTT CCGAAAACCA AGGCATTCAT TCTCGGCACC GGCATTCCGC CCATTATCGC TGACAAGATC GTCTATTACG AAGACAAGGC TTTCCTGCGG CGTCTGTTGC CTGCGCCTAC CCCCGAAATG CCCAACGGTC GCTCGAATGC GTTGCTCGAC GCCGAGATCA AAGAGCTTCG CTCCGCGGTC GCTGAGCTCC GGGCGGCATT TCGGTCTCGC CCGATGACCG ACGAGGAGGT GGCCGATCCC TCCACAATCC CCGCCGACGC CTCCTTCGAT TTTGGGGATG TGGACGTCGA TCTCGAAGGG CTCTCGGAAG ACGATATGAA AGCCTGGGTC CTGAATTACA TCGACGCTCA AGCCATTCCG CCGTCGCGGC GGACCGGCCG CAAGCAGAAG GGTGAGGGCC ATGAACGACG GGCATAA
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Protein sequence | MTPLANATTS VRTAQGLAVA LAACAVFLLV ASNVLLLGLR LHDGGLHWSE IATGWSRYGA DPRFDRWLTL STLVGVVVVF GLLGAIFRHR PSPLHGSARF ASEREIKAAG LRSKQGVLLG RKDGALLCFG GSEHVLVYAP TRAGKGVGYV IPNLLNWPDS VVVLDVKKEN WDRSAGFRAA HGQEVYLFDP LEEHGCTARY NPLGYVRSDP ADLYDDLQRI AVMLFPAETR GDPFWFEAAR SAFVAIGGYV AETPGLSLTI GEILHQLSAA PDLKAHFEKI IAARKFGSSP LSRHCIAALN DFLAASENTM NSVRKTVTAR LGLWLNPRID AATTTNDFDL RHLRQKPMSI YLGVTPDNLD RMAPLLNLFF QQVVDLNTRE LPEQNPKLNR KVLLLLDEFP ALGNVNVLAR SVAFIAGYGI RLLTVIQSPA QLRGIYGIDT ARNFMTNHAV EVVFAPKEQD VANELSERIG YDTVKARSRS GPKGLAMRST SETISEHRRA LMLPQELKLL PKTKAFILGT GIPPIIADKI VYYEDKAFLR RLLPAPTPEM PNGRSNALLD AEIKELRSAV AELRAAFRSR PMTDEEVADP STIPADASFD FGDVDVDLEG LSEDDMKAWV LNYIDAQAIP PSRRTGRKQK GEGHERRA
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