Gene Acry_3478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAcry_3478 
Symbol 
ID5159340 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidiphilium cryptum JF-5 
KingdomBacteria 
Replicon accessionNC_009469 
Strand
Start bp7497 
End bp8426 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content56% 
IMG OID640538790 
Productpyridoxal biosynthesis lyase PdxS 
Protein accessionYP_001220223 
Protein GI148243985 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0214] Pyridoxine biosynthesis enzyme 
TIGRFAM ID[TIGR00343] pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.180632 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGATA TGCCGACTAA TCTTACCGAA ACATCACCGT TACGACTTAA GACGGGACTA 
GCCGAAATGC TCATGGGTGG GGTCATCATG GATGTCACTA CCGCAGAGCA GGCGAAGATC
GCAGAGAATG CCGGTGCAGT GGCAGTGATG GCACTCGAGC GGGTCCCCGC ACAGATACGA
GCCGAGGGTG GCGTCGCTAG AATGGCTTCC CCGAAAAAAA TCAAGGAGAT CATGACTGCC
GTTTCGATCC CCGTGATGGC AAAATGCCGG ATCGGCCATT TCGCCGAAGC GCAGGTGCTT
CAGGCTCTCG GCGTAGATTT CATCGATGAG TCGGAAGTTC TGAGCCCGGC TGATGAAATG
CATCATATCA ACAAGCACGC TTTCGTATCT CCTTTCGTCT GTGGGGCACG TAACCTGGGC
GAGGCACTGC GGCGGATTGC CGAAGGAGCC GCAATGATAA GGACAAAAGG GGAGGCCGGT
ACCGGCGATG TGATGCACGC AGTCCGGCAC GTCCGACAAA TCACCAAGGA TATTCACGCC
TTAACGATTC TACGCGAGGA TGAACTGTAT GCCGCCGCAA AGGAATTGGC GGCTCCCTAC
GAGTTGGTAA GAATCGTCGC CAGTATCGGC CGACTGCCCG TGCCAAACTT CGCGGCCGGC
GGCATTGCAA CCCCTGCTGA CGCGGCGCTC GTCCGTCATC TAGGGGCAGA AGCAGTTTTC
GTAGGCTCTG GTATCTTCAT GAGAGACTCA CAGAATTTTG TCGATCCTAG CGAGGCACAA
TCACGCGCAG AAGCAATAGT CCAGGCAACA ACGCATTACG ACAACCCCCA GATCCTTGCC
GAGATCAGCG AATCATGCCT CGGAGCCATA CACGGCCTTG CTGCGGCTAG TTTGAAAGAA
GAAGTGTTGC TCCAGACTCG AGGCTGGTAG
 
Protein sequence
MSDMPTNLTE TSPLRLKTGL AEMLMGGVIM DVTTAEQAKI AENAGAVAVM ALERVPAQIR 
AEGGVARMAS PKKIKEIMTA VSIPVMAKCR IGHFAEAQVL QALGVDFIDE SEVLSPADEM
HHINKHAFVS PFVCGARNLG EALRRIAEGA AMIRTKGEAG TGDVMHAVRH VRQITKDIHA
LTILREDELY AAAKELAAPY ELVRIVASIG RLPVPNFAAG GIATPADAAL VRHLGAEAVF
VGSGIFMRDS QNFVDPSEAQ SRAEAIVQAT THYDNPQILA EISESCLGAI HGLAAASLKE
EVLLQTRGW