| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2847 |
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| Symbol | |
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| ID | 5135964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2999503 |
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| End bp | 3002067 |
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| Gene Length | 2565 bp |
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| Protein Length | 854 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640534291 |
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| Product | hypothetical protein |
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| Protein accession | YP_001218697 |
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| Protein GI | 147674540 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCAGA CAACAACACC GTCGCAAGAT GTGCAAGAGA TGGTGGCGCA AGCAGACACT
GGCGCTCGAG CCCCCAAAGG GCTTCCGGGG CGTGTGCTTT GGTTTGTTCC GCTCTGTTGG
TCACTTTTCC AACTTTGGTA CGCTTCACCA CTCCCCTTTA TCTTCGACTT CGGCGTACTC
AATGATACGC AAGCTCGCTC CATTCACTTA ACGTTTGCCG TTTTTCTCGC CTTCACGGCC
TATCCGGCAA TGAAAGGTTC GCCGCGCGAT CGTATTCCTT TAACCGACTG GCTTTTAGCA
CTCGCGGGCA GCTTTTCCGC TGCTTATATC TATCTATTTT ACGCCGAGCT CGCAGGACGC
TCAGGCGCAC CCACTCAGTT TGATGTGATC GCCTCTGTGG TCGGCATGGT ATTACTCCTC
GAAGCGACAC GCCGGGCATT AGGCCCACCA CTGATGATGG TGGCCGCGCT CTTTTTACTT
TACACCTTCG CTGGCCCTTA CATGCCCGAT GTGATTGCCC ACAAAGGGGC GAGCCTAAAT
AAGGCGATGT CACACTTGTG GCTCACCACC GAAGGGGTAT TTGGTGTCGC ACTTGGGGTA
TCTACCTCAT TCGTGTTCCT GTTCGTGCTT TTTGGTGCCA TGCTGGAGCG GGCTGGCGCG
GGCGCTTACT TCATCAAAGT GGCTTTCTCG ATGCTTGGGC ACATGCGTGG TGGTCCAGCC
AAAGCGGCCG TGGTAGCGTC AGGCCTTTCC GGATTGGTTT CTGGCTCTTC AATCGCCAAC
GTGGTCACCA CGGGAACTTT CACCATTCCT TTAATGAAAC GTGTCGGCTT TCCCGGCACC
AAAGCGGGTG CAGTGGAAGT AGCCGCCTCC ACCAACGGCC AACTAACCCC ACCGATTATG
GGCGCAGCAG CTTTTTTAAT GGTGGAATAT GTCGGGATTT CCTATGTTGA AGTGATCAAA
GCGGCGATCC TACCCGCACT GATTTCTTAT ATCGCACTGA TTTATATCGT TCACCTTGAA
GCGTGTAAGG CGGGCATGAG TGGTTTACCT CGTCGTCATC AATCGACGGT GGCTCAAAAG
CTGCTCTCAT TTACCGCCAC GATTCTTGGT TTATGCGTGA TAAGTGCCGT GGTTTATTAC
GGTATCGGCT GGACTAAAGA AGCCTTTGGC GACGCAGCAA CGCCCATCCT CACTGTGGTG
TTATTGGCCG CTTATGTTGG CTTAGTGAAA ATATCCGCCC CCTACGCCAA AGAGGGTTTA
GGGATTGATG AGAATTTGCA GTACGTCCCC GATGTCGCCC CGACGTTAAA ATCCGGCCTG
CACTACTTGC TGCCGATTGT GGTATTGGTG TGGTGTTTGA CGGTTGAGCG ATTCTCGCCC
GGCTTATCGG CCTTCTGGGC CAGCGTGTTT ATGATTTTCA TCCTACTCAC GCAACGTCCA
CTGATGGCTC TCTTTAATCG CACGGGTTCA CTGGGTGATG CGGCGAAAGA GGGCGTGACT
GACCTTTTGG AAAGCTTAGT CTCAGGTGCC CGCAATATGA TCGGTATTGG GGTCGCGACC
GCTGCCGCTG GCACAGTCGT GGGGGTAGTT ACCCTGACTG GGATTGGTTT AGTGATGACC
GACTTTGTCG AGTTTATCTC TGGCGGTAAC TTGATGCTGA TGCTGATTTT CACTGCCGTG
ATCAGCTTAA TTCTGGGTAT GGGCTTACCA ACGACCGCCA ACTACATCGT GGTTTCCACC
TTGATGGCTC CAGTCATTGT CACTCTAGGC GCTGAGCATG GCTTAATCAT CCCACTGATT
GCGGTGCATC TGTTCGTATT CTATTTCGGT ATTTTGGCCG ATGATACGCC TCCGGTCGGA
CTTGCCGCAT TTGCCGCGGC GGCGATCGCC AAATCCGACC CGATCCGCAC CGGTATCCAA
GGCTTTGCCT ACGATATCCG CACCGCGATT TTGCCTTTCA TGTTTGTGTT TAATACCCAG
TTGCTGCTGA TGGGTATTGA TAGCTGGTGG CACTTAATGC TGACCATACT CTCTTCCATC
ACCGCCATGT TGCTGTTCTC GGCGGCAACC CAAGGGTGGT GGTTAACCAA AACCAAATGG
TGGGAAGTCG TCGCGCTACT GGTGCTGACC TTCACCTTCT TCCGCCCCGG TTTTTGGTGG
GACATGGTTT ATCCCGCGCA AGTCATGTAT GCCGGCACTA AGTTAGAGCA GATTGTCGAG
CAAGCTCCCG TTGGACAACC GATCCAGATG ATCGTCGCGG GAGAGAATCT TAAAGGCGAA
TACACCTCTA AAACCGTGCA ACTGCCGTTT GAAGATCGCG CTGTCAGCGC TCAAGAGCGG
ATCGCCTCAA TGGGCTTAAC TCTGCTTAAT GATAAAAACC GCATGCTAGT AGAAATGGTT
GAGTTTGGCA GCCCAGCCGA AGCAGCGGGC ATCGATTTCG ATTGGGAAAT TCGCTCAGTG
GTGGTCGATA GCGATCGACC AATGAAAGAG TGGGTATTCT TGCCTGCGAT TTTGCTGACC
TTACTGCTGG CTTGGAACCA AAAAAGACGG ATAAAAAAGG CGTAA
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| Protein sequence | MTQTTTPSQD VQEMVAQADT GARAPKGLPG RVLWFVPLCW SLFQLWYASP LPFIFDFGVL
NDTQARSIHL TFAVFLAFTA YPAMKGSPRD RIPLTDWLLA LAGSFSAAYI YLFYAELAGR
SGAPTQFDVI ASVVGMVLLL EATRRALGPP LMMVAALFLL YTFAGPYMPD VIAHKGASLN
KAMSHLWLTT EGVFGVALGV STSFVFLFVL FGAMLERAGA GAYFIKVAFS MLGHMRGGPA
KAAVVASGLS GLVSGSSIAN VVTTGTFTIP LMKRVGFPGT KAGAVEVAAS TNGQLTPPIM
GAAAFLMVEY VGISYVEVIK AAILPALISY IALIYIVHLE ACKAGMSGLP RRHQSTVAQK
LLSFTATILG LCVISAVVYY GIGWTKEAFG DAATPILTVV LLAAYVGLVK ISAPYAKEGL
GIDENLQYVP DVAPTLKSGL HYLLPIVVLV WCLTVERFSP GLSAFWASVF MIFILLTQRP
LMALFNRTGS LGDAAKEGVT DLLESLVSGA RNMIGIGVAT AAAGTVVGVV TLTGIGLVMT
DFVEFISGGN LMLMLIFTAV ISLILGMGLP TTANYIVVST LMAPVIVTLG AEHGLIIPLI
AVHLFVFYFG ILADDTPPVG LAAFAAAAIA KSDPIRTGIQ GFAYDIRTAI LPFMFVFNTQ
LLLMGIDSWW HLMLTILSSI TAMLLFSAAT QGWWLTKTKW WEVVALLVLT FTFFRPGFWW
DMVYPAQVMY AGTKLEQIVE QAPVGQPIQM IVAGENLKGE YTSKTVQLPF EDRAVSAQER
IASMGLTLLN DKNRMLVEMV EFGSPAEAAG IDFDWEIRSV VVDSDRPMKE WVFLPAILLT
LLLAWNQKRR IKKA
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