| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2838 |
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| Symbol | cafA |
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| ID | 5136833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2987291 |
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| End bp | 2988760 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640534282 |
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| Product | ribonuclease G |
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| Protein accession | YP_001218688 |
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| Protein GI | 147674328 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.201847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGCAG AGTTGCTGTT AAACGTCACC CCGAGTGAAA CTCGGGTGGC GATGATTGAA
GGGGGAATCC TTCAGGAAAT CCATATTGAA CGTGAAGCCA AACGCGGCAT TGTTGGCAAT
ATTTACAAAG GCAAAGTCAG CCGGGTATTA CCGGGCATGC AAGCTGCTTT TGTGGATATT
GGACTCGACA AGGCCGCTTT TTTACATGCC TCGGATATTG TGCCCCACAC CGAGTGTGTT
GCCGAAAGTG AGAAGCAGCA GTTCCAAGTG CGCGATATTT CCGAGCTGGT GCGCCAAGGG
CAAGATATTG TGGTGCAAGT GGTCAAAGAC CCGCTTGGTA CTAAGGGTGC TCGCTTAACT
ACCGATATTA CGCTCCCTTC TCGTTATCTG GTGTTTATGC CGGGGGCAAG CCATGTTGGC
GTATCACAAC GCATCGAAAG CGAAGCGGAG CGCGAGCGCC TAAAGAAAAT CGTTTCTCAT
TATTGCGATG AGCATGGCGG GTTCATTATC CGAACCGCAG CAGAAGGGGC AAACGAAAAA
GAGTTGACTC AAGATGCGGC GTTTCTTAAG CGTTTGTGGT CAAAAGTGAT TGAGCGGCGC
AGCAAATACA AGAACCGCTC TATGCTGTAT GGCGAGCTTG GTTTGGCGCA GCGCATTTTG
CGTGACTTTG TCGGCACCGA ACTGACCAAA ATTCTCATCG ATTCACGACA AGAGTTCGAA
AACCTCAAAG AGTTTACCTC CGAATATGTC CCTGAGCTGA CGGCTAAATT AGAGCTGTAC
CACGGCGATA AGCCCATTTT TGACATGTAC GATACGGAAA ATGAGATTCA GCGCTCTCTC
GAACGCAAAG TGGAGCTCAA ATCGGGGGGG TATCTGATCA TCGATCAAAC CGAAGCCATG
ACCACCATCG ATATCAATAC GGGCGCGTTT GTTGGCCGCC GTAATCTCGA AGAGACCATT
TTCAACACCA ATATTGAAGC GACTCAAGCC ATTGCTCGTC AGCTGCGTCT GCGCAATCTG
GGTGGGATTA TCATTATTGA CTTTATCGAT ATGGCGTCGG ATGAGCACCG TAAGCGAGTG
CTCACCTCTT TAGAGACAGC GTTGATGAAA GATCGGGTCA AAACCAACAT CAACGGCTTT
ACTCAGCTTG GGTTGGTGGA GATGACGCGT AAAAGAACTC GAGAAAGCAT TGAACATGTG
CTCTGTTCGA CTTGTCCAAC GTGTGAAGGG CGAGGCAGCG TGAAAACTGT GGAAACGGTG
TGCTTTGAGA TTTTGCGCGA AATTACGCGC GTGAATCGAG CCTATGATGC GGACAAATTC
GTGGTTTATG CTTCACCGGC AGTGGCCGAT ACTTTGCAAG GTGAAGAGTC ACATGCCTTG
GCCGAGTTGG AAGTGTTCAT TGGTAAAGAA GTGCGAATTC AAGCAGAACC ACTCTACAAC
CAAGAGCAAT TTGATGTTGT GATGATGTAA
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| Protein sequence | MSAELLLNVT PSETRVAMIE GGILQEIHIE REAKRGIVGN IYKGKVSRVL PGMQAAFVDI
GLDKAAFLHA SDIVPHTECV AESEKQQFQV RDISELVRQG QDIVVQVVKD PLGTKGARLT
TDITLPSRYL VFMPGASHVG VSQRIESEAE RERLKKIVSH YCDEHGGFII RTAAEGANEK
ELTQDAAFLK RLWSKVIERR SKYKNRSMLY GELGLAQRIL RDFVGTELTK ILIDSRQEFE
NLKEFTSEYV PELTAKLELY HGDKPIFDMY DTENEIQRSL ERKVELKSGG YLIIDQTEAM
TTIDINTGAF VGRRNLEETI FNTNIEATQA IARQLRLRNL GGIIIIDFID MASDEHRKRV
LTSLETALMK DRVKTNINGF TQLGLVEMTR KRTRESIEHV LCSTCPTCEG RGSVKTVETV
CFEILREITR VNRAYDADKF VVYASPAVAD TLQGEESHAL AELEVFIGKE VRIQAEPLYN
QEQFDVVMM
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