Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2838 |
Symbol | cafA |
ID | 5136833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 2987291 |
End bp | 2988760 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640534282 |
Product | ribonuclease G |
Protein accession | YP_001218688 |
Protein GI | 147674328 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.201847 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGCAG AGTTGCTGTT AAACGTCACC CCGAGTGAAA CTCGGGTGGC GATGATTGAA GGGGGAATCC TTCAGGAAAT CCATATTGAA CGTGAAGCCA AACGCGGCAT TGTTGGCAAT ATTTACAAAG GCAAAGTCAG CCGGGTATTA CCGGGCATGC AAGCTGCTTT TGTGGATATT GGACTCGACA AGGCCGCTTT TTTACATGCC TCGGATATTG TGCCCCACAC CGAGTGTGTT GCCGAAAGTG AGAAGCAGCA GTTCCAAGTG CGCGATATTT CCGAGCTGGT GCGCCAAGGG CAAGATATTG TGGTGCAAGT GGTCAAAGAC CCGCTTGGTA CTAAGGGTGC TCGCTTAACT ACCGATATTA CGCTCCCTTC TCGTTATCTG GTGTTTATGC CGGGGGCAAG CCATGTTGGC GTATCACAAC GCATCGAAAG CGAAGCGGAG CGCGAGCGCC TAAAGAAAAT CGTTTCTCAT TATTGCGATG AGCATGGCGG GTTCATTATC CGAACCGCAG CAGAAGGGGC AAACGAAAAA GAGTTGACTC AAGATGCGGC GTTTCTTAAG CGTTTGTGGT CAAAAGTGAT TGAGCGGCGC AGCAAATACA AGAACCGCTC TATGCTGTAT GGCGAGCTTG GTTTGGCGCA GCGCATTTTG CGTGACTTTG TCGGCACCGA ACTGACCAAA ATTCTCATCG ATTCACGACA AGAGTTCGAA AACCTCAAAG AGTTTACCTC CGAATATGTC CCTGAGCTGA CGGCTAAATT AGAGCTGTAC CACGGCGATA AGCCCATTTT TGACATGTAC GATACGGAAA ATGAGATTCA GCGCTCTCTC GAACGCAAAG TGGAGCTCAA ATCGGGGGGG TATCTGATCA TCGATCAAAC CGAAGCCATG ACCACCATCG ATATCAATAC GGGCGCGTTT GTTGGCCGCC GTAATCTCGA AGAGACCATT TTCAACACCA ATATTGAAGC GACTCAAGCC ATTGCTCGTC AGCTGCGTCT GCGCAATCTG GGTGGGATTA TCATTATTGA CTTTATCGAT ATGGCGTCGG ATGAGCACCG TAAGCGAGTG CTCACCTCTT TAGAGACAGC GTTGATGAAA GATCGGGTCA AAACCAACAT CAACGGCTTT ACTCAGCTTG GGTTGGTGGA GATGACGCGT AAAAGAACTC GAGAAAGCAT TGAACATGTG CTCTGTTCGA CTTGTCCAAC GTGTGAAGGG CGAGGCAGCG TGAAAACTGT GGAAACGGTG TGCTTTGAGA TTTTGCGCGA AATTACGCGC GTGAATCGAG CCTATGATGC GGACAAATTC GTGGTTTATG CTTCACCGGC AGTGGCCGAT ACTTTGCAAG GTGAAGAGTC ACATGCCTTG GCCGAGTTGG AAGTGTTCAT TGGTAAAGAA GTGCGAATTC AAGCAGAACC ACTCTACAAC CAAGAGCAAT TTGATGTTGT GATGATGTAA
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Protein sequence | MSAELLLNVT PSETRVAMIE GGILQEIHIE REAKRGIVGN IYKGKVSRVL PGMQAAFVDI GLDKAAFLHA SDIVPHTECV AESEKQQFQV RDISELVRQG QDIVVQVVKD PLGTKGARLT TDITLPSRYL VFMPGASHVG VSQRIESEAE RERLKKIVSH YCDEHGGFII RTAAEGANEK ELTQDAAFLK RLWSKVIERR SKYKNRSMLY GELGLAQRIL RDFVGTELTK ILIDSRQEFE NLKEFTSEYV PELTAKLELY HGDKPIFDMY DTENEIQRSL ERKVELKSGG YLIIDQTEAM TTIDINTGAF VGRRNLEETI FNTNIEATQA IARQLRLRNL GGIIIIDFID MASDEHRKRV LTSLETALMK DRVKTNINGF TQLGLVEMTR KRTRESIEHV LCSTCPTCEG RGSVKTVETV CFEILREITR VNRAYDADKF VVYASPAVAD TLQGEESHAL AELEVFIGKE VRIQAEPLYN QEQFDVVMM
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