| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2829 |
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| Symbol | mshD |
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| ID | 5136074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2978601 |
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| End bp | 2979155 |
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| Gene Length | 555 bp |
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| Protein Length | 184 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640534273 |
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| Product | MSHA pilin protein MshD |
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| Protein accession | YP_001218679 |
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| Protein GI | 147674580 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.720742 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATTGCTA AGCGTGGTTT TACCTTGGTT GAGATGATCA TCGTGATTGT GGTGTTGGGC
GTTGCACTGG TCGGCGTAAC CACCTCGTTA TATCCACGCT CCAAACAGAG TGCTGAGCAA
GTGTTATCGG TGAAAGCCGC AGAATTGGGG CGGGCAGTAC TGGATGAAGT TTTGGGGCGT
GCTTTTGATC AACACTCAGG CCCGAATGGT GGCTTACCTG AATGTGTGAT TACGGAAACG
GCTGGACGTA CGCTTTGCAG TGCACCATCC GCGTTAGGTA AAGATACAGG TGAATCCAAT
AACACAGAAT TCAACGATGT GGATGATTAC ATCACATCAA GCCCAATACC CGTCACTGAT
GTGCTGGGTA CGGATATTTC CTCTGAATAC CAACGCTTTA GCGTATCGAT ACAAGTGTTT
TATGTATCAG ATAATGGCGG TCAATTTTCG GCAACGCCTG CTACAGAGCG AACCCACTAC
AAACGTATTG CATTAGTGAT TTACGATCCG CAAGGTAATG CGTATCCGTT TGCTGCGATT
AAGGGGAACT ACTGA
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| Protein sequence | MIAKRGFTLV EMIIVIVVLG VALVGVTTSL YPRSKQSAEQ VLSVKAAELG RAVLDEVLGR
AFDQHSGPNG GLPECVITET AGRTLCSAPS ALGKDTGESN NTEFNDVDDY ITSSPIPVTD
VLGTDISSEY QRFSVSIQVF YVSDNGGQFS ATPATERTHY KRIALVIYDP QGNAYPFAAI
KGNY
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