| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2820 |
|---|
| Symbol | mshL |
|---|
| ID | 5137651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 2969793 |
|---|
| End bp | 2971472 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640534264 |
|---|
| Product | MSHA biogenesis protein MshL |
|---|
| Protein accession | YP_001218670 |
|---|
| Protein GI | 147674773 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAAA TCGTACTCGC TTCAGTGGTG ACTTCTTTGG TGGGATGCTC AATGGGACAT
CGTGATCCTG TTGAAGCTAA ACAAGCCCTG AACCAAGCTA TTAACGAGAC GAACAGTCGT
CAAATTGACC AATTACCGCC TTCGGTAGAG GCTGATTTGA TGCCTGATAT GGATACTCTT
ACTGCCAGTG AGCCGAAAAC TTTGCAGCGT TTTCGAATCC AAGCTGAGGA TGTCGAAGCC
AAGGCCTTTT TTGCCAGTTT AGTGCAGGGA ACCGAGTACA GTGCGGCAAT CCACCCTGCG
GTGACTGGGC GAATTACTCT CAACTTGACC GACGTTACCC TAGATGAAGC CTTAGGTGTC
GTGCGTGATT TGTACGGTTT TGAGGTGGTA AAAGAGGGTA AAGTGATCCA AGTCTATCCG
GCTGGATTGC GTACGGTCAC GATTCCGGTT GATTATCTGC AATTTAAACG CACAGGGCGT
TCGTTAACGT CGATTACGAC GGGCACCATC ACCAATACGG ACACCAATAA CTCAAATTCA
AGTAGTAGCT CCTCGTCCAG CATCAGTAGT AATAGCTCTT CGGATGGTTC TTCGAGCAAT
TCTAATTCCA ACAGAAGCGA TGCTCGTGGC GGAACGGAAA TTGAAACCAC GAACGAGAGT
GATTTCTGGC CTTTGTTAGA AAAGGCGGTG GCTCAGTTGC TTGGCGGTAG CGGTGGCCAA
ACGGTCATTG TCAATCCACA GGCGGGAGTA TTAACCCTGC GCGCTTATCC CGATGAAATT
CGTCAAGTAA ACGAGTTTCT GGGGATCTCG CAACAGCGAA TGCATCGACA AGTGATCCTC
GAAGCTAAGA TTCTTGAAGT GACCCTCAGT GATGGTTACC AGCAGGGGAT TAATTGGAGT
AAAGCCTTCT CCTCCAATGG TGCCAATTAC AAGATAGGTT CCGGATCCAT TACTCAAGAC
AGTAATGGCA ATCCTATCAC TTCTGTATTA CCTGGCTTAG ATGCGATAGG TAATTTGTTA
GGTGGTCAAT CCAATGTGGT GATCTCCAGT GGCAGCTTTG ATGCCGTGAT CAGTTTTATG
GCGACGCAAG GTGATTTAAA TGTTCTGTCT AGCCCGCGAG TAACTGCGTC CAACAACCAG
AAAGCGGTGA TCAAAGTCGG GACGGATGAA TACTATGTGA CCGACTTATC CAGTGTGGTT
GGAACTGGGG ATAACGCGCA AGCGTCGCCA GATATTACGC TTACGCCTTT CTTCTCTGGG
ATTTCATTGG ATGTCACGCC GCAAATTGAC GATCAAGGCA ACGTATTACT GCATGTGCAT
CCTGCGGTGA TTGAAGTCGA GCAGCAAACC AAGAAAATTT TATACCGAAG TGAAGAGATT
GAGCTGCCAT TGGCGAGAAG TTCAATTAGA GAGTCGGATT CGGTTATTCG GGCGAAAGAC
GGCGATGTAG TGGTGATCGG TGGTTTGATG AAGTCAAATA CCGTTGACCA AGTGTCAAAA
GTGCCATTTT TAGGCGATGT TCCCGCGTTA GGGCATCTGT TCCGTAACAC CACAAAACTG
ACACAGAAAA CAGAACTGGT TATTTTGCTC AAGCCGACGG TCGTTGGGGT AAATACTTGG
CAAAAAGAGC TGGAGCGCTC GCGCAGTTTG CTACAGGAAT GGTTCCCGGA TAGTCAATAA
|
|---|
| Protein sequence | MRKIVLASVV TSLVGCSMGH RDPVEAKQAL NQAINETNSR QIDQLPPSVE ADLMPDMDTL
TASEPKTLQR FRIQAEDVEA KAFFASLVQG TEYSAAIHPA VTGRITLNLT DVTLDEALGV
VRDLYGFEVV KEGKVIQVYP AGLRTVTIPV DYLQFKRTGR SLTSITTGTI TNTDTNNSNS
SSSSSSSISS NSSSDGSSSN SNSNRSDARG GTEIETTNES DFWPLLEKAV AQLLGGSGGQ
TVIVNPQAGV LTLRAYPDEI RQVNEFLGIS QQRMHRQVIL EAKILEVTLS DGYQQGINWS
KAFSSNGANY KIGSGSITQD SNGNPITSVL PGLDAIGNLL GGQSNVVISS GSFDAVISFM
ATQGDLNVLS SPRVTASNNQ KAVIKVGTDE YYVTDLSSVV GTGDNAQASP DITLTPFFSG
ISLDVTPQID DQGNVLLHVH PAVIEVEQQT KKILYRSEEI ELPLARSSIR ESDSVIRAKD
GDVVVIGGLM KSNTVDQVSK VPFLGDVPAL GHLFRNTTKL TQKTELVILL KPTVVGVNTW
QKELERSRSL LQEWFPDSQ
|
|---|
| |