Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2808 |
Symbol | metH |
ID | 5137354 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 2951123 |
End bp | 2954803 |
Gene Length | 3681 bp |
Protein Length | 1226 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640534252 |
Product | B12-dependent methionine synthase |
Protein accession | YP_001218658 |
Protein GI | 147675082 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain [COG1410] Methionine synthase I, cobalamin-binding domain |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGGAAAAG AAGTAAGACA ACAACTCGAA CAGCAATTGA AACAACGTAT CCTACTGATT GATGGTGGTA TGGGTACCAT GATTCAGAGT TATAAGTTAC AAGAGGAAGA CTATCGCGGT GCACGATTTG TCGATTGGCA CTGTGATTTG AAAGGAAATA ACGACCTCTT AGTGCTTACT CAGCCGCAAA TTATTAAAGA GATTCACTCC GCTTACCTTG AAGCGGGGGC GGATATTCTT GAGACCAACA CCTTTAACTC AACCACGATT GCCATGGCAG ACTATGACAT GCAATCGCTC AGTGCTGAAA TTAACTTTGC CGCGGCTAAG CTTGCACGTG AAGTCGCGGA TGAGTGGACG GCTAAAGATC CAAGTCGGCC ACGCTATGTG GCTGGTGTGC TTGGGCCAAC CAACCGTACT TGCTCTATTT CGCCAGATGT GAACGATCCA GGATTTCGTA ACGTCACTTT TGATGGGCTT GTTGAAGCCT ATTCCGAATC GACGCGCGCT TTGATCAAAG GTGGCAGCGA TCTGATCCTC ATTGAAACCA TCTTCGATAC ACTTAACGCC AAAGCCTGTG CGTTTGCGGT CGATAGCGTA TTTGAAGAGC TGGGCATCAG CTTACCTGTG ATGATTTCCG GCACGATTAC CGATGCCTCT GGGCGAACTC TGTCAGGACA GACAACGGAA GCTTTCTACA ACGCCTTGCG TCATGTACGG CCGATTTCGT TTGGCTTGAA CTGTGCGTTA GGTCCTGATG AGCTGCGCCA GTACGTGGAA GAGCTTTCAC GCATTTCAGA ATGCTATGTT TCCGCGCACC CAAATGCCGG ACTGCCCAAT GCGTTTGGTG AATACGATCT CTCTGCCGAG GAAATGGCAG AACATATTGC GGAATGGGCA CAAGCTGGCT TTTTGAATTT GGTCGGTGGT TGCTGTGGAA CTACACCTGA GCATATCGCC GCCATTGCCA AAGCCGTCGA GGGTGTAAAA CCAAGGGCTC TGCCAGATCT GAAAGTAGAA TGTCGTCTCT CGGGTTTAGA GCCGCTCAAT ATTGGCCCTG AAACCTTGTT TGTTAACGTG GGCGAACGTA CTAACGTCAC CGGTTCTGCG CGTTTTAAGC GTTTAATTAA AGAAGAGCAA TACGACGAAG CGCTCGATGT GGCGCGTGAG CAAGTCGAAA ACGGCGCGCA GATCATTGAT ATCAACATGG ATGAAGGCAT GTTGGACGCC GAGGCGTGTA TGGTGCGCTT TTTGAATCTA TGCGCCTCTG AACCAGAAAT ATCCAAAGTT CCGGTGATGG TCGACTCCTC TAAATGGGAA GTCATTGAAG CGGGTCTGAA ATGCATTCAG GGTAAAGGCA TCGTCAACTC TATCTCTCTA AAAGAAGGGA AAGAGAAGTT TATTGCCCAA GCCAAATTGG TGCGCCGCTA CGGTGCCGCG GTGATTGTGA TGGCATTTGA CGAAGTGGGC CAAGCCGATA CCCGTGAGCG CAAATTAGAG ATCTGTCGTC GGGCTTACCA TATTTTGGTC GATGAGGTGG GCTTCCCACC GGAAGATATT ATTTTTGACC CGAACATCTT TGCTGTTGCG ACCGGAATTG ATGAGCACAA TAACTACGCA CTGGATTTCA TTAATGCAGT GGCGGACATT AAGCGTGAGC TGCCGCATGC GATGATTTCT GGCGGTGTTT CTAACGTTTC CTTCTCTTTC CGCGGCAACA ACTATGTGCG TGAAGCGATC CATGCTGTTT TCCTTTATCA CTGCTTCAAA CACGGCATGG ACATGGGGAT TGTCAACGCA GGGCAGCTTG AAATCTACGA TAACGTTCCG CTGAAACTGC GTGAGGCAGT GGAAGATGTG ATCCTCAATC GACGTAGCGA TGGCACGGAA AGACTGCTTG AGATCGCCGA AGCGTATCGC GAAAACAGTG TTGGTAAAGA AGAGGATGCT TCTGCATTAG AGTGGCGCGC ATGGCCTGTG GCTAAGCGCC TAGAGCACGC TTTAGTCAAA GGCATCACCG AATTTATCGT CCAAGACACT GAAGAAGCAC GTCAGCAAGC CAGTAAACCA CTGGAAGTGA TTGAAGGGCC GCTGATGGAT GGTATGAACG TGGTCGGTGA CTTGTTCGGG GAAGGGAAAA TGTTCCTACC GCAAGTCGTA AAATCAGCGC GTGTCATGAA ACAAGCCGTT GCGTATCTTG AGCCTTTCAT TAATGCGCAA AAAAGTGGTA GCACTTCAAA TGGTAAGATT TTGCTGGCGA CCGTAAAAGG CGATGTGCAT GACATTGGTA AGAACATTGT TGGCGTCGTG CTGCAGTGTA ATAACTTCGA GATCATCGAT CTTGGTGTGA TGGTGCCTTG CGAGCAGATC CTCAAAGTCG CACGCGAGCA AAATGTCGAT ATCATCGGTC TCTCTGGGCT TATCACGCCG TCTTTGGATG AGATGGTACA CGTGGCGAAA GAGATGGAGC GACAAGGGTT TGAACTGCCA CTTTTGATTG GTGGGGCAAC AACGTCTAAA GCGCATACTG CGGTGAAGAT TGAACAGAAT TATCATGCGC CTGTAGTGTA CGTGAATAAC GCGTCGCGCG CGGTAGGGGT GTGCACATCA TTATTGTCTG ATGAACAGCG CCCCGGATTT ATCGAACGTT TGGATCTCGA TTATGAGCGC ACGCGTGATC AGCATGCTCG TAAAACGCCC AAATCGCGCC CAGTCACGTT AGAGCAGGCA CGTGCTAATA AAGCGGCGCT GGATTGGGCA AATTACACGC CGCCCGCTCC TGCGAAACCG GGTGTGCATG TGTTTGAAAA CATTGCGTTA GCCACACTAC GTCCTTATAT CGATTGGACG CCTTTTTTTA TGACTTGGTC GCTTATGGGC AAATACCCTG CCATTTTGGA GCATGAAGAG GTCGGTGAAG AGGCCAAACG TCTGTTTCAT GATGCCAATG CCTTACTTGA TAAAGTAGAG CGAGAAGGAC TACTGAAAGC CAGTGGTATG TGTGCACTGT TTCCAGCAGC CAGCGTGGGC GATGACATTG AGGTGTACAG TGATGAATCG CGTACGCAAG TCGCGCATGT GCTGTACAAC TTGCGTCAGC AGACTGAGAA ACCGAAAGGG GCCAACTACT GTTTGTCGGA CTATGTTGCT CCGAAAGAGA GCGGTAAACG TGATTGGATT GGCGCGTTTG CAGTAACTGG TGGCATTGGT GAGCGAGCCT TGGCCGATGC TTATAAAGCT CAGGGTGATG ATTACAATGC GATCATGATC CAAGCGGTAG CCGATCGTTT GGCGGAAGCC TTTGCGGAAT ATCTGCATGA AAAAGTGCGT AAAGAGATTT GGGGTTATGC GAGCGATGAA AATCTCTCCA ATGATGACCT GATCCGTGAG CGTTATCAGG GCATTCGACC CGCGCCGGGG TATCCCGCGT GTCCTGAGCA TACCGAGAAA GCGACTTTGT GGCAGATGCT AAATGTCGAA GAGACCATAG GTATGTCACT GACCACAAGC TATGCGATGT GGCCGGGCGC TTCGGTATCC GGTTGGTATT TCTCGCATCC CGATTCTCGC TATTTTGCGG TAGCGCAGAT CCAACCAGAT CAACTGCACA GCTACGCTGA GCGTAAAGGT TGGCGTTTGG AAGAAGCTGA AAAGTGGCTA GCGCCTAACC TTGATGCTTA A
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Protein sequence | MGKEVRQQLE QQLKQRILLI DGGMGTMIQS YKLQEEDYRG ARFVDWHCDL KGNNDLLVLT QPQIIKEIHS AYLEAGADIL ETNTFNSTTI AMADYDMQSL SAEINFAAAK LAREVADEWT AKDPSRPRYV AGVLGPTNRT CSISPDVNDP GFRNVTFDGL VEAYSESTRA LIKGGSDLIL IETIFDTLNA KACAFAVDSV FEELGISLPV MISGTITDAS GRTLSGQTTE AFYNALRHVR PISFGLNCAL GPDELRQYVE ELSRISECYV SAHPNAGLPN AFGEYDLSAE EMAEHIAEWA QAGFLNLVGG CCGTTPEHIA AIAKAVEGVK PRALPDLKVE CRLSGLEPLN IGPETLFVNV GERTNVTGSA RFKRLIKEEQ YDEALDVARE QVENGAQIID INMDEGMLDA EACMVRFLNL CASEPEISKV PVMVDSSKWE VIEAGLKCIQ GKGIVNSISL KEGKEKFIAQ AKLVRRYGAA VIVMAFDEVG QADTRERKLE ICRRAYHILV DEVGFPPEDI IFDPNIFAVA TGIDEHNNYA LDFINAVADI KRELPHAMIS GGVSNVSFSF RGNNYVREAI HAVFLYHCFK HGMDMGIVNA GQLEIYDNVP LKLREAVEDV ILNRRSDGTE RLLEIAEAYR ENSVGKEEDA SALEWRAWPV AKRLEHALVK GITEFIVQDT EEARQQASKP LEVIEGPLMD GMNVVGDLFG EGKMFLPQVV KSARVMKQAV AYLEPFINAQ KSGSTSNGKI LLATVKGDVH DIGKNIVGVV LQCNNFEIID LGVMVPCEQI LKVAREQNVD IIGLSGLITP SLDEMVHVAK EMERQGFELP LLIGGATTSK AHTAVKIEQN YHAPVVYVNN ASRAVGVCTS LLSDEQRPGF IERLDLDYER TRDQHARKTP KSRPVTLEQA RANKAALDWA NYTPPAPAKP GVHVFENIAL ATLRPYIDWT PFFMTWSLMG KYPAILEHEE VGEEAKRLFH DANALLDKVE REGLLKASGM CALFPAASVG DDIEVYSDES RTQVAHVLYN LRQQTEKPKG ANYCLSDYVA PKESGKRDWI GAFAVTGGIG ERALADAYKA QGDDYNAIMI QAVADRLAEA FAEYLHEKVR KEIWGYASDE NLSNDDLIRE RYQGIRPAPG YPACPEHTEK ATLWQMLNVE ETIGMSLTTS YAMWPGASVS GWYFSHPDSR YFAVAQIQPD QLHSYAERKG WRLEEAEKWL APNLDA
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