| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2758 |
|---|
| Symbol | hfq |
|---|
| ID | 5136659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 2912235 |
|---|
| End bp | 2912498 |
|---|
| Gene Length | 264 bp |
|---|
| Protein Length | 87 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640534204 |
|---|
| Product | RNA-binding protein Hfq |
|---|
| Protein accession | YP_001218616 |
|---|
| Protein GI | 147674122 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1923] Uncharacterized host factor I protein |
|---|
| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.269118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGG GGCAATCTCT ACAAGACCCA TTTCTGAATG CACTACGTCG TGAACGTATC
CCTGTTTCTA TCTACCTTGT GAACGGCATT AAACTGCAAG GTCAGATCGA ATCATTTGAT
CAATTTGTGA TCTTGCTGAA GAACACAGTA AACCAAATGG TTTACAAGCA TGCGATTTCT
ACTGTGGTTC CTGCTCGTCC AGTTAGCCAC CACAGCGGCG ACCGCCCAGC ATCGGATCGT
CCAGCAGAGA AGTCTGAAGA GTAA
|
|---|
| Protein sequence | MAKGQSLQDP FLNALRRERI PVSIYLVNGI KLQGQIESFD QFVILLKNTV NQMVYKHAIS
TVVPARPVSH HSGDRPASDR PAEKSEE
|
|---|
| |