Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2755 |
Symbol | amiB |
ID | 5136339 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 2907406 |
End bp | 2909151 |
Gene Length | 1746 bp |
Protein Length | 581 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640534201 |
Product | N-acetylmuramoyl-L-alanine amidase |
Protein accession | YP_001218613 |
Protein GI | 147675682 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.00949544 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGACCTT TTGAGTCAGT TGGAGTTATG TTGAACGTTA GCCGTTTTGT ATTCTTACTC TTTGGATTCG TTTTACTCGC GATCGCTCCT CAAACTTGGG CGAACGTTTT GGAAGGCGTG CGCGTGTGGC CTTCTCCTGA TGAGACACGA GTGGTATTAG ATGTCAAATC CGAGGTGGAT TACAGCTACT TTACCCTCAG CTCTCCTGAG CGCTTGGTGG TTGACCTCAA ACAGAGCACC TCTCGCGCTA AGTTACCGGT TAATGTCACT GAAAGTGGCA TTTTATCGAA AGTTCGCGCT TCATCTCCCC CTGAAAAAAG TACATTTCGT TTGGTGTTTG AGCTCAAACA AAAAACAACG CCAACTTTAT TTAAATTGGC TCCGACACCC GGTGGTCAAT ATGGCCATCG TTTAGTCATT GATATGCCAC ATGGCAAAGT GAGTGAGAGC TCTTCCGCCA GCACGCCGAG TTCACCCGCT CAAGTCAGTA AAGATGCCTC TCAACTCTTA GGGAATGACG ATATTGTGGT GGCGATTGAC GCGGGACATG GCGGTGAAGA TCCTGGTTCC ATTGGTCCTA CACGCAAATA TGAAAAAGAC ATCACCTTGA GCGTGTCTAA AAAGTTGGCG GATCAACTCA ATGCAGTGCC GGGAATGAAA GCGGTACTGA CTCGCCGTGG TGACTATTTT GTAAATCTGA ATAAACGTAC GGAAATTGCG CGTCGTAGCA AGGCGCACTT GTTGGTTTCG GTGCATGCGG ATGCGTTTCA TACTCCACAG CCGCGCGGGG GATCGGTGTT TGTGCTGAAT ACCCGCCGTG CCAATACCGA AATTGCCCGT TGGGTGGAAA ATCACGAGCA ACAATCTGAA TTGCTGGGCG GTGCTGGCGA AGTACTTTCG AAAACCAATA ACGATCGTAA CGTGAGTCAG ACCCTACTGG ATCTGCAGTT TAGCCATTCG CAAAAAGAGG GCTATAAAGT CGCGACGAAT ATTTTGCGTG AAATGGGCAA GGTGGCGCAT CTGCATAAAA CCGAACCCGT TAATGCAAGT TTGGCGGTAT TGAAGTCACC AGACATCCCA TCGGTACTGG TGGAAACAGG CTTTATCTCT AACCCATCAG AAGAAAAATT GCTGATTCAG CGCAGTCATC AAGATAAGTT AGCTCGCGCT TTAGCCACGG CGATTGTGCA GTACTTTGAA GATAATCCGC CAGAGGGCAC ACTGTTTGCC AACCGAGGTA AAGCTCAGAA ACACAAAGTG CAGCGTGGAG AATCAATTGG TCTGATTGCT AACCAGTATG GGGTCAGTGT CGATGCTTTG AAAAAAGCCA ACAACCTCAA GTCTTCGACG ATTTCGGTTG GGCAACTGCT GACTATTCCA GCTTCTTCAG CACCAAACCC AGTACCTGTT CCTGTGATGG CAAATCCTGT AGAAACGGAA ACTATTACCC ATGTGGTAAA AACGGGCGAT TTTCTCGGTA AACTTGCCAC CACCTATAAG GTTTCAGTGG CTTCGATAAA AAAAGAGAAC AATCTGAAAT CGGATACTCT AGTGCTCGGG CAGAAGCTGA AAATCACGGT GAGTTTAAAA GATAAGCCGC TGCGTAAGCA CAAGGTGCAG CGCGGTGAAT TCCTGAGCAA AATCGCTGAT CAATACAATG TTAGCGTTGA TAGCATTCGC CAAGCCAACC AGCTACGCAC TGACCAATTG TTGGTTGGGC AGCAACTGAT TATCCCGAAT AAATAA
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Protein sequence | MRPFESVGVM LNVSRFVFLL FGFVLLAIAP QTWANVLEGV RVWPSPDETR VVLDVKSEVD YSYFTLSSPE RLVVDLKQST SRAKLPVNVT ESGILSKVRA SSPPEKSTFR LVFELKQKTT PTLFKLAPTP GGQYGHRLVI DMPHGKVSES SSASTPSSPA QVSKDASQLL GNDDIVVAID AGHGGEDPGS IGPTRKYEKD ITLSVSKKLA DQLNAVPGMK AVLTRRGDYF VNLNKRTEIA RRSKAHLLVS VHADAFHTPQ PRGGSVFVLN TRRANTEIAR WVENHEQQSE LLGGAGEVLS KTNNDRNVSQ TLLDLQFSHS QKEGYKVATN ILREMGKVAH LHKTEPVNAS LAVLKSPDIP SVLVETGFIS NPSEEKLLIQ RSHQDKLARA LATAIVQYFE DNPPEGTLFA NRGKAQKHKV QRGESIGLIA NQYGVSVDAL KKANNLKSST ISVGQLLTIP ASSAPNPVPV PVMANPVETE TITHVVKTGD FLGKLATTYK VSVASIKKEN NLKSDTLVLG QKLKITVSLK DKPLRKHKVQ RGEFLSKIAD QYNVSVDSIR QANQLRTDQL LVGQQLIIPN K
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