| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2741 |
|---|
| Symbol | psd |
|---|
| ID | 5137002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 2901106 |
|---|
| End bp | 2901963 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640534187 |
|---|
| Product | phosphatidylserine decarboxylase |
|---|
| Protein accession | YP_001218607 |
|---|
| Protein GI | 147674504 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0688] Phosphatidylserine decarboxylase |
|---|
| TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000000000722964 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGA TTAAAGTTGG ACTGCAATAT TGGATTCCAC AACATGCCCT GACCCGCTTG
GTTGGCAAGT TGGCGTCTGC GCGTGCAGGC AGCCTGACCA CGGCCATCAT CCGCTGGTTC
ATCAAGCAAT ATAACGTCAA CATGGACGAG GCTCTGCACT CTGATCCGAC TCACTTCAAG
ACGTTTAATG AATTTTTTGT GCGTGAGCTA AAAGCTGGCG TGCGCCCTAT CGCTGAAGGC
GAAAAGGTGA TCACCCATCC TGCCGATGCG TGCGTGAGTC AGTTTGGTGC GATTGAATAC
GGTAAACTTA TCCAAGCCAA AGGCCACACT TACTCAGCCC AAGAGCTGCT CGGTGGTGAT
GCCAAGCTCG CGGAAGAATT CCGTGATGGT GATTTTGCGA CTCTGTATCT CTCGCCACGT
GATTATCACC GCGTACATAT GCCTTGTGAT GGCACTTTGC GCCAAATGAT CTACGTACCG
GGCGATCTGT TCTCGGTAAA CCCTCTGACA GCGGAAAATG TACCGAACTT GTTTGCCCGC
AACGAGCGTG TGGTGTGTAT TTTCGATACA GAATTTGGCC CAATGGCACA AGTGCTGGTT
GGCGCCACCA TTGTCGGCAG TATTGAACTG GTTTGGGCGG GCACCGTGAC TCCGCCGCGT
GGCAACACCG TTTATCGTTG GGACTACCCA GCCAACGGTA ACCAAGCAGT GGTTCTCAAA
AAAGGCGAAG AGATGGGTCG CTTTAAACTG GGCTCCACCG TGATCAACCT GTTTGCCAAA
CAAGCTATTC GCTTTGATGA CAGCATGGCA CTGGGCGCAC CAACCCGCAT GGGCGAGCCC
TACGCACACC AAGCTTAA
|
|---|
| Protein sequence | MDKIKVGLQY WIPQHALTRL VGKLASARAG SLTTAIIRWF IKQYNVNMDE ALHSDPTHFK
TFNEFFVREL KAGVRPIAEG EKVITHPADA CVSQFGAIEY GKLIQAKGHT YSAQELLGGD
AKLAEEFRDG DFATLYLSPR DYHRVHMPCD GTLRQMIYVP GDLFSVNPLT AENVPNLFAR
NERVVCIFDT EFGPMAQVLV GATIVGSIEL VWAGTVTPPR GNTVYRWDYP ANGNQAVVLK
KGEEMGRFKL GSTVINLFAK QAIRFDDSMA LGAPTRMGEP YAHQA
|
|---|
| |