| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2731 |
|---|
| Symbol | rpoC |
|---|
| ID | 5137453 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 2886589 |
|---|
| End bp | 2890794 |
|---|
| Gene Length | 4206 bp |
|---|
| Protein Length | 1401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640534177 |
|---|
| Product | DNA-directed RNA polymerase subunit beta' |
|---|
| Protein accession | YP_001218597 |
|---|
| Protein GI | 147674725 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGACT TATTAAACTT TCTAAAAGCA CAGCATAAGA CCGAAGAATT TGATGCGATC
AAAATCGGTC TGGCTTCACC AGACATGATC CGTTCATGGT CTTTTGGTGA AGTGAAAAAA
CCTGAAACCA TCAACTATCG TACGTTCAAG CCTGAGCGTG ATGGTCTGTT CTGTGCGCGT
ATTTTTGGCC CGGTAAAAGA CTACGAATGT CTTTGTGGCA AATATAAGCG TCTGAAACAC
CGTGGTGTGA TTTGTGAGAA GTGTGGCGTT GAAGTCACCC AAACTAAAGT TCGTCGTGAC
CGTATGGGCC ACATCGAACT GGCTTCTCCA GTTGCGCACA TCTGGTTCCT GAAGTCTCTG
CCATCTCGTA TCGGTCTACT GATGGACATG CCTCTGCGTG ACATCGAACG CGTACTTTAC
TTTGAAATGT ACGTAGTGAC TGAGCCAGGC ATGACTGACC TTGAACGTGG TCAAATGCTG
ACTGAGGAAG AGTACCTCGA CCGTTTGGAA GAGTGGGGCG ATGAGTTCAC CGCGAAAATG
GGTGCTGAAG CGATCAAAGA TCTGCTGGCA TCGATGGATC TGCCTGCAGA AGCAGAGCAG
ATGCGCGAAG AGCTGGATAC CACTAACTCT GAAACCAAAC GTAAGAAACT GACTAAGCGT
CTGAAGCTGG TTGAAGCGTT CGTCGCATCA GGTAACAAAC CTGAATGGAT GATCCTGACT
GTACTACCAG TTCTGCCGCC TGATCTACGT CCATTGGTTC CACTGGATGG CGGTCGTTTC
GCAACGTCGG ATCTGAACGA TCTGTACCGT CGCGTCATCA ACCGTAACAA CCGTTTGAAG
CGTCTGCTTG AACTGGCGGC ACCAGACATC ATCGTACGTA ACGAAAAACG TATGCTGCAA
GAGTCTGTGG ATGCGCTGCT GGATAACGGC CGTCGTGGTC GTGCGATCAC GGGCTCGAAC
AAGCGTCCGC TGAAGTCTCT GGCTGACATG ATCAAAGGTA AGCAAGGTCG TTTCCGTCAG
AACCTGCTGG GTAAACGTGT TGACTACTCA GGCCGTTCGG TTATCACCGT AGGTCCATAC
CTGCGTCTGC ACCAGTGTGG TCTACCGAAG AAAATGGCTC TTGAGCTGTT CAAACCATTC
ATCTACAGCA AGCTGGAAAC TCGTGGCCTA GCAACGACGA TCAAAGCCGC TAAGAAAATG
GTTGAGCGCG AAGAAGCGGT CGTATGGGAT ATCTTGGATG AAGTGATCCG CGAACACCCA
GTGCTGCTGA ACCGTGCACC AACACTTCAC CGTTTGGGTA TCCAAGCGTT TGAACCGGTC
CTGATCGAAG GTAAAGCGAT CCAACTGCAC CCACTAGTGT GTGCGGCGTA TAACGCGGAC
TTCGACGGTG ACCAAATGGC GGTACACGTT CCTCTGACGC TTGAAGCGCA GTTGGAAGCT
CGTACCCTGA TGATGTCAAC CAACAACATT CTGTCGCCAG CGTCAGGTGA TCCAATCATC
GTACCGTCTC AGGACGTGGT ACTGGGTCTG TACTACATGA CCCGTGAAAA GATCAATGCG
AAAGGCGAAG GTATGTACCT GACTGGTCCT GCTGAGGCTG AGAAGGCGTA CCGTACTAAG
ACTGCTGAGC TGCACGCTCG CGTTAAAGTA CGTATTACCG AAACCATCAA GCATGAAAAC
GGTAAGCTGA CCACTGAAAC CAAGATGATT GACACGACCG TTGGCCGTGC CATGTTGTGG
CAAATCGTAC CGAAAGGTCT GCCATACAGC TTGGTGAACC AGAAGTTAGG TAAGAAGCAA
ATTTCTAACC TGCTCAACGA GGCATACCGT AAGCTGGGTC TGAAAGACAC CGTTATCTTC
GCTGACCAAA TCATGTACAC CGGTTTCGCT TACGCGGCAC TGTCTGGTGT ATCGGTTGGT
ATCGACGATA TGGTAGTTCC AGCGGCTAAG TACACGGAAA TTGCTGAAGC GGAAGAAGAA
GTACGCGAAA TTCAAGAGCA GTTCCAGTCT GGTCTGGTGA CCGCTGGCGA ACGCTACAAC
AAAGTGATCG ACATTTGGGC ATCAACCAAC GATCGCGTAG CGAAAGCGAT GATGGAAAAC
CTCTCTTCTG AGCAGGTGAT TAACCGTCAA GGCGAACAAG AAAAACAAGA GTCGTTCAAC
AGCATCTATA TGATGGCCGA CTCAGGTGCT CGTGGTTCTG CTGCTCAGAT CCGTCAGTTG
GCGGGTATGC GTGGTCTGAT GGCGCGTCCA GATGGCTCGA TCATCGAAAC GCCAATCACG
GCAAACTTTA AAGAAGGTCT AAACGTTCTT CAGTACTTTA TCTCAACGCA CGGTGCTCGT
AAGGGTCTGG CGGATACGGC ACTGAAAACA GCGAACTCCG GTTACCTGAC TCGTCGTCTG
GTAGACGTAG CGCAAGACGT TGTGGTGACT GAACATGACT GTGGCACCCT AGAAGGCGTG
GTGATGACAC CGCACATCGA AGGTGGTGAC GTTAAAGTCG CACTGACTGA ACTGGCACTG
GGCCGTGTGG TATCAGAAGA TATCCTCAAG CCAGGTACAG ATGAAGTGTT GATCCCTCGT
AATACACTGC TGGATGAAAA GTGGTGTAAG GTGATCAACG ATAACTCTGT TGACCAAATC
AAAGTACGTT CAGTGGTAAC TTGTGATTCT GACTTCGGTT GTTGTGCGCA GTGTTACGGT
CGTGACCTAG CACGTGGTCA CTTGGTGAAC CAAGGTGAAG CGGTCGGTGT TATAGCGGCA
CAGTCAATCG GTGAGCCAGG TACACAGCTG ACGATGCGTA CGTTCCACAT CGGTGGTGCG
GCATCAACAG CAGCAGCAGA AAACAGCATC CAAGCTAAGA ACAACGGTTC TGTGAAACTG
CACAATGCGA AGTTCGTAAC CAATAAAGAT GGCAAGCTCG TTATCACCTC TCGTGCTTCT
GAGCTGACCA TCATTGACGA ATTTGGTCGT ACCAAAGAGA AACACAAACT GCCATACGGC
TCTATGCTGA GCAAAGCCGA TGGTGATGCA GTGGCTGCGG GCGAAACCGT AGCGAACTGG
GAAGCGCATA CCATGCCAAT CATCACTGAA GTGGCAGGTC GCGTACAGTT TGTGGATATG
ATCGATGGCG TAACCGTTTC TCGTCAAACG GACGATCTGA CTGGTCTGTC TTCAAGTGAA
GTGACTGAAG CCGCAGCGCG TCCTGCAGCA GGTAAAGACA TGCGTCCAGC CATTAAACTG
GTTGACGCAA ATGGTAAAGA TGTCCTGATC CCAGGTACTG ACATGCCAGC TCAATACTTC
CTGCCAGGTA AAGCGATTGT GAACTTGGAC GACGGTGCTG AAGTGAATGT GGGTGATACA
CTGGCTCGTA TTCCTCAGAA GTCTGGCGGT AACAAGGACA TCACCGGTGG TCTACCACGC
GTTGCTGACC TGTTTGAAGC GCGTAAGCCA AAAGAGCCTG CGATTCTGGC TGAGCACTCA
GGTACCGTAT CGTTCGGTAA AGAGACTAAA GGTAAGCGTC GTTTGATCAT CACTCGTGAC
AGCGGTGACA CTTACGAAGA GATGATCCCT AAACATCGTC AATTGAACGT GTTTGAAGGT
GAGCGCATTG AGCGTGGTGA TGTGATTGCG GACGGCCCAG AGTCGCCACA TGACATCCTG
CGTCTGCGTG GGATCCATGC AGTGACCACT TACATCGCGA ACGAGGTTCA GGAAGTTTAC
CGTCTACAAG GCGTTAAGAT TAACGATAAG CACATCGAGA CTATCGTTCG TCAAATGCTG
CGTAAGTGTA CGATCACCTT CGCGGGTGAC TCAGAGTTCT TGCCTGGCGA GACAGTTGAG
TACTCACAAG TGAAGATCGC GAACCGTAAA CTGGTTGAAG AAGGCAAAGA GCCAGCTCGT
TTCGAGCGTG AGTTGTTGGG TATTACCAAA GCATCTCTGG CGACTGAGTC TTTCATCTCA
GCAGCATCGT TCCAAGAAAC CACTCGCGTT CTAACGGAAG CAGCGGTATC TGGTAAGCGT
GACGATCTGC GCGGTCTGAA AGAGAACGTG ATCGTTGGCC GTCTGATCCC GGCTGGTACA
GGTTTTGCGT ACCACCAAGA TCGTCAAGCC AAACGTGCAC AAGAACAGCA AGGTCCATCG
GCTGAACAAG CCACTGACAA CCTCGCTGCA CTGTTGAATG CAGGTTTCTC TTCTGACGAC
GAGTAA
|
|---|
| Protein sequence | MKDLLNFLKA QHKTEEFDAI KIGLASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRD RMGHIELASP VAHIWFLKSL
PSRIGLLMDM PLRDIERVLY FEMYVVTEPG MTDLERGQML TEEEYLDRLE EWGDEFTAKM
GAEAIKDLLA SMDLPAEAEQ MREELDTTNS ETKRKKLTKR LKLVEAFVAS GNKPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLELAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY
LRLHQCGLPK KMALELFKPF IYSKLETRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RTLMMSTNNI LSPASGDPII VPSQDVVLGL YYMTREKINA KGEGMYLTGP AEAEKAYRTK
TAELHARVKV RITETIKHEN GKLTTETKMI DTTVGRAMLW QIVPKGLPYS LVNQKLGKKQ
ISNLLNEAYR KLGLKDTVIF ADQIMYTGFA YAALSGVSVG IDDMVVPAAK YTEIAEAEEE
VREIQEQFQS GLVTAGERYN KVIDIWASTN DRVAKAMMEN LSSEQVINRQ GEQEKQESFN
SIYMMADSGA RGSAAQIRQL AGMRGLMARP DGSIIETPIT ANFKEGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDVVVT EHDCGTLEGV VMTPHIEGGD VKVALTELAL
GRVVSEDILK PGTDEVLIPR NTLLDEKWCK VINDNSVDQI KVRSVVTCDS DFGCCAQCYG
RDLARGHLVN QGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASTAAAENSI QAKNNGSVKL
HNAKFVTNKD GKLVITSRAS ELTIIDEFGR TKEKHKLPYG SMLSKADGDA VAAGETVANW
EAHTMPIITE VAGRVQFVDM IDGVTVSRQT DDLTGLSSSE VTEAAARPAA GKDMRPAIKL
VDANGKDVLI PGTDMPAQYF LPGKAIVNLD DGAEVNVGDT LARIPQKSGG NKDITGGLPR
VADLFEARKP KEPAILAEHS GTVSFGKETK GKRRLIITRD SGDTYEEMIP KHRQLNVFEG
ERIERGDVIA DGPESPHDIL RLRGIHAVTT YIANEVQEVY RLQGVKINDK HIETIVRQML
RKCTITFAGD SEFLPGETVE YSQVKIANRK LVEEGKEPAR FERELLGITK ASLATESFIS
AASFQETTRV LTEAAVSGKR DDLRGLKENV IVGRLIPAGT GFAYHQDRQA KRAQEQQGPS
AEQATDNLAA LLNAGFSSDD E
|
|---|
| |