| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2727 |
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| Symbol | rplA |
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| ID | 5137849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2880327 |
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| End bp | 2881028 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640534173 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_001218593 |
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| Protein GI | 147675294 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000000000405483 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAAC TAACTAAGCG TATGCGTACT ATCCGCGCAA AAGTGGATGT AACTAAAGAG
TACGACATCA ACGAAGCTGT TGCTCTGCTG AAAGAGATGG CAACTGCGAA GTTCGTTGAA
TCAGTTGACG TTGCTGTTAA CCTGGGTATC GATGCTCGTA AATCTGACCA AAACGTTCGT
GGCGCTACTG TACTGCCACA CGGTACTGGC CGTGACATCC GCGTAGCGGT ATTCACTCAA
GGTGCTAACG CTGAAGCAGC TAAAGCAGCT GGTGCAGAAC TGGTTGGTAT GGAAGATCTG
GCTGATCTCG TGAAAAAAGG CGAAATGAAC TTCGACGTAG TTATCGCATC TCCAGATGCA
ATGCGCGTTG TTGGTCAACT AGGTACTATC CTAGGCCCAC GTGGTCTGAT GCCAAACCCG
AAAGTTGGTA CTGTAACTCC TAACGTTGCT GAAGCGGTTA AGAACGCGAA AGCAGGTCAG
GTTCGTTACC GTAACGACAA GAACGGTATC ATCCATACCA CTATCGGTAA GGTGACGTTC
GAAGCAGACC AACTGAAAGA GAACTTAGAA GCTCTGCTGG TTGCTCTGAA GAAAGCAAAA
CCATCTTCTG CGAAAGGCGT TTTCGTGAAG AAGGTAAGCA TCTCTACTAC TATGGGTGCT
GGCGTTGCTG TCGATCAGAA TACTCTGAGC GCACAAGTTT AA
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| Protein sequence | MAKLTKRMRT IRAKVDVTKE YDINEAVALL KEMATAKFVE SVDVAVNLGI DARKSDQNVR
GATVLPHGTG RDIRVAVFTQ GANAEAAKAA GAELVGMEDL ADLVKKGEMN FDVVIASPDA
MRVVGQLGTI LGPRGLMPNP KVGTVTPNVA EAVKNAKAGQ VRYRNDKNGI IHTTIGKVTF
EADQLKENLE ALLVALKKAK PSSAKGVFVK KVSISTTMGA GVAVDQNTLS AQV
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