Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2695 |
Symbol | |
ID | 5136433 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 2853357 |
End bp | 2856800 |
Gene Length | 3444 bp |
Protein Length | 1147 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640534143 |
Product | sensor histidine kinase |
Protein accession | YP_001218573 |
Protein GI | 147675339 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0591] Na+/proline symporter [COG0642] Signal transduction histidine kinase [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAAGGTT GGTTGGTAAT TCCCGTTTCG CTCGCGTATC TCGGCGTGCT GTTTTTGATT GCGTGGTATG GTGACAGGCA AACTCGTTGG CTCGCCAATT GGCGGCCGTG GATCTATAGC TTGTCGATTG CGGTTTACTG TACCTCGTGG ACGTTTTACG GCACAGTCGG GCAGGCGAGT GTCAATCCTT GGTCGTTTCT GCCTATCTAT ATCGCCCCGA TCTTGATGTT TGTGTTTGGT TGGCGAGTTT TAGCGCGGCT GATTTTGATT GCTAAACGTG AGCACATTAC TTCGCTCGCC GATTTTATTG CCGCCCGTTA TGGTAAATCG CAGGGTTTGG CCGTGGCGGT GACGGTGATC GCGGTCTTGG GTATTTTGCC GTATATCGCG CTACAACTGC GCGGCATTAC GATGGGATTG AACATTGTCG CTCCCGATTT AATGACAGTG TACGGCTACC AAGAATCGCA TGTATCTTGG TTTGTGGTAT TGGCGCTGGC TCTGTTTACC ATGCTGTTTG GCACTCGGCA TATTGATAAT ACCGAGCATC ACCGCGGAAT GATGATGGCG ATTGCGTTTG AATCGATCGT CAAATTGGTG GCCTTTCTCT GCGTTGGGGT ATTTATCGCG TATCTGGCGT GGCGTACCGA TGGATTAGAG CTTTCAACAA TTGCGGCCAG CACTTACCAA GCCCCAAACT GGCCGACCTT ATTGATTCAT ACCTTGCTGA CCATGATTGC GATTGTGTGT CTGCCGCGCC AGTTTCATAC CATGGTCGTT GAAAACGAGC GCCCGCAAGA TCTGCACACC GCGCGCTGGC TCTTTCCCGT TTATCTTCTC TTAATGAGCC TGTTTGTGTT GCCGATTGCT TGGACGGGAC AAGGTTTACT GCCAAACACC TCACCCGATA CGTTTGTGAT TAGCCTACCT GTGTTTGCTG GGGCTCACGA TATAGCATTG TTGGCTTTTT TGGGCGGAAC ATCGGCAGCT TCGGGGATGG TGATTGTCTC GACCATTGCC CTTGCGATCA TGGTATCCAA TGATTTAGTG ATGCCTTTAC TACTACGCCG GATGCGCTTG TCGCAGCGCA CTCATCGACA TTTTTCCGGT TTGTTGGTGG TGATCCGCCG CACCTTAATC CTACTTTTGC TGTTCGGTGC ATGGGGTTTT TATCTGGTAC TCGACAGCAT TCCTTCGTTA TCGGCGATTG GGTTTCTATC GTTTTCAGCG ATTACCCAGT TTGCCCCTGC GATTTTTGGC GGTATGTACT GGCGAGAAGG CAATCGTAAA GGGGTTTATG TTGGTTTAGC GGTCGGTTTT ACCCTGTGGC TTATCACCTT GATGAGTGCC ACCGATATGC TGGCGGGCGA TGCCAGCAAT AACGTCTTGC TGTGGGTGAT CACTCCACCA GATTGGTTGG TGGCTCTAGG GTTAAAAAGT GCGGATTGGG GCATGCTACT GAGCGTGACC CTTAATACCT TGTGCTATAT CGGTGTGTCT TTGGTGACGC GCGCCAGCTT AAGTGAGCGT TTGCAAGCCG CGGCGTTTGT CGGTACTCCG CTGCCCGAAA ACGAAAACAT GAGCCTTTAC CAAAGTCGCG TGACTGTGGG TGAGCTTGAA ATGTTGGCCT CACGTTTTGT GGGGCGGACT CGGGTACGCA ACGCCTTTGC TCAATACTGG AGTCAGCAGC GTGAAACCTT GCTACCGAAT CAGCAAGCCT CTTCCGCCTT GATCCGCCAT ACCGAACGCG TACTGGCTGG GGTATTTGGT GCTTCGTCCG CTAAGTTGGT GCTCACCTCG GCGCTGCAAG GACGTAAAAT GCAGCTTGAG GAAGTGGCGA CCATAGTCGA TGAGGCGTCC GAGCTGTACG ATTTCAGCCG CGGCTTGTTG CAAGGGGCGA TTGAACACAT CGGCCAAGGT ATTGCCGTGG TGGATAAACA GTTACGTTTA GTGGCATGGA ACCAGCGCTA TCTTGAGCTG TTTGAGTTTC CGCCGGGATT GATTCAAGTG GGACGGCCGA TTGCGGATGT GATCCGCCAT AACGCGCAGC AAGGTTTATG TGGGCCGGGC GATCCAGAAG ATCACGTACG GCGACGGGTC TACCACTTAG AGCAAGGGAC AAGTCATACC TCCTCGCGAG TGCGGGCGGA TGGGCGAGTG ATTGAGGTGC AGGGGAACCA GATGCCCGGC GGTGGATTTG TGATGAGCTT TACTGACATT ACGGTGTTTA GAGAAGCGGA ACAAAGCCTG AAAATGGCCA ACGAAACGCT AGAAGAGCGT GTACTGCAGC GTACCTTGGA GCTAGAAAAG CTCAATAAAC AGTTAGTCAC CGCGACCCAG CGTTCGGAGC GCGAGTCGCA ATCCAAATCG CGCTTTTTGG CGGCGGTCAG CCATGATTTG ATGCAGCCAT TGAATGCCGC ACGCCTGTTT GCCTCATCTT TATCTGAAGT GGCTAAAGAG GCGGAGGTGC AGAAACTTGC CCACCATATT GAAAGTGCTT TGGGCGCGGC GGAGGATTTG ATCAGCGATT TGCTGGATAT TTCGCGTTTG GAGTCCGGCA AAATCGATCT GCATCCGCAC AGTTTTGCGA TTATGGATGT ATTGTCGAAT CTCAATGCCG AGTTCAGTGC CCTCGCCGCT AAACAAGGTG TGCAATTTAG CCTAGTGCCA TCATTACTTT GGGTGCATTC AGATCCCAAA TTGCTGCGCC GAGTAATCCA AAATTTCCTG ACTAATGCGT TTCGTTATAA CCCGAACGGC AAAGTGATTC TCGGGGTGCG CAGAGTCGCC ACCGGGCAAG TGCGTATTGA TGTGTGGGAT AATGGGATTG GTATTGAGCA AGATAAGCAG CAGGAAATTT TTGAGGAGTT TAACCGCGGT GGGCAGGTAC GCTCCGACCA AGGTCTAGGG CTTGGGCTGG CGATTTCGAA AGGGATTGCC CATGTACTGG GTCATCACAT TTCGATGCGC TCTTGGCCGG GGCAGGGCAG TGTTTTCTCG ATTACTTTAG ATCGCGCTCA ACCCATGCCG TCGTCACTCA CTCAGACGGT TGCGATGGTC AATGAGAAAG GTTCAGAGCT GCAACATCTG CGTGTGCTGT GTGTCGATAA CGAGCCAGAT ATTTTGGTTG GGATGCGTGA TTTGCTGGAG CGTTGGGGGT GTGAAGTCAA AACCGCGACC GATATTCATG GCAGCCTCAA AGCCTTGGAA GGGCAATGGA TCCCCGATGT GATTTTGTCT GATTACCGCT TGGATAACGG ACGGACAGGG CTTGAAGTGC TGCAGCAGTG CCGCTTGCGT TTGGGGGATT GTTTCGCTGG CGTGATCATC AGTGCCGATC GCAATCCCGA TATCTTGGAT GGGATTGAAT CAAGCGGTTT TCGCTTTATG GCTAAACCCA TTAAGCCCCT CAAACTGAGA GCCTTACTGA ATAGTCTGTC TTGA
|
Protein sequence | MQGWLVIPVS LAYLGVLFLI AWYGDRQTRW LANWRPWIYS LSIAVYCTSW TFYGTVGQAS VNPWSFLPIY IAPILMFVFG WRVLARLILI AKREHITSLA DFIAARYGKS QGLAVAVTVI AVLGILPYIA LQLRGITMGL NIVAPDLMTV YGYQESHVSW FVVLALALFT MLFGTRHIDN TEHHRGMMMA IAFESIVKLV AFLCVGVFIA YLAWRTDGLE LSTIAASTYQ APNWPTLLIH TLLTMIAIVC LPRQFHTMVV ENERPQDLHT ARWLFPVYLL LMSLFVLPIA WTGQGLLPNT SPDTFVISLP VFAGAHDIAL LAFLGGTSAA SGMVIVSTIA LAIMVSNDLV MPLLLRRMRL SQRTHRHFSG LLVVIRRTLI LLLLFGAWGF YLVLDSIPSL SAIGFLSFSA ITQFAPAIFG GMYWREGNRK GVYVGLAVGF TLWLITLMSA TDMLAGDASN NVLLWVITPP DWLVALGLKS ADWGMLLSVT LNTLCYIGVS LVTRASLSER LQAAAFVGTP LPENENMSLY QSRVTVGELE MLASRFVGRT RVRNAFAQYW SQQRETLLPN QQASSALIRH TERVLAGVFG ASSAKLVLTS ALQGRKMQLE EVATIVDEAS ELYDFSRGLL QGAIEHIGQG IAVVDKQLRL VAWNQRYLEL FEFPPGLIQV GRPIADVIRH NAQQGLCGPG DPEDHVRRRV YHLEQGTSHT SSRVRADGRV IEVQGNQMPG GGFVMSFTDI TVFREAEQSL KMANETLEER VLQRTLELEK LNKQLVTATQ RSERESQSKS RFLAAVSHDL MQPLNAARLF ASSLSEVAKE AEVQKLAHHI ESALGAAEDL ISDLLDISRL ESGKIDLHPH SFAIMDVLSN LNAEFSALAA KQGVQFSLVP SLLWVHSDPK LLRRVIQNFL TNAFRYNPNG KVILGVRRVA TGQVRIDVWD NGIGIEQDKQ QEIFEEFNRG GQVRSDQGLG LGLAISKGIA HVLGHHISMR SWPGQGSVFS ITLDRAQPMP SSLTQTVAMV NEKGSELQHL RVLCVDNEPD ILVGMRDLLE RWGCEVKTAT DIHGSLKALE GQWIPDVILS DYRLDNGRTG LEVLQQCRLR LGDCFAGVII SADRNPDILD GIESSGFRFM AKPIKPLKLR ALLNSLS
|
| |