Gene VC0395_A2695 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2695 
Symbol 
ID5136433 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2853357 
End bp2856800 
Gene Length3444 bp 
Protein Length1147 aa 
Translation table11 
GC content52% 
IMG OID640534143 
Productsensor histidine kinase 
Protein accessionYP_001218573 
Protein GI147675339 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAGGTT GGTTGGTAAT TCCCGTTTCG CTCGCGTATC TCGGCGTGCT GTTTTTGATT 
GCGTGGTATG GTGACAGGCA AACTCGTTGG CTCGCCAATT GGCGGCCGTG GATCTATAGC
TTGTCGATTG CGGTTTACTG TACCTCGTGG ACGTTTTACG GCACAGTCGG GCAGGCGAGT
GTCAATCCTT GGTCGTTTCT GCCTATCTAT ATCGCCCCGA TCTTGATGTT TGTGTTTGGT
TGGCGAGTTT TAGCGCGGCT GATTTTGATT GCTAAACGTG AGCACATTAC TTCGCTCGCC
GATTTTATTG CCGCCCGTTA TGGTAAATCG CAGGGTTTGG CCGTGGCGGT GACGGTGATC
GCGGTCTTGG GTATTTTGCC GTATATCGCG CTACAACTGC GCGGCATTAC GATGGGATTG
AACATTGTCG CTCCCGATTT AATGACAGTG TACGGCTACC AAGAATCGCA TGTATCTTGG
TTTGTGGTAT TGGCGCTGGC TCTGTTTACC ATGCTGTTTG GCACTCGGCA TATTGATAAT
ACCGAGCATC ACCGCGGAAT GATGATGGCG ATTGCGTTTG AATCGATCGT CAAATTGGTG
GCCTTTCTCT GCGTTGGGGT ATTTATCGCG TATCTGGCGT GGCGTACCGA TGGATTAGAG
CTTTCAACAA TTGCGGCCAG CACTTACCAA GCCCCAAACT GGCCGACCTT ATTGATTCAT
ACCTTGCTGA CCATGATTGC GATTGTGTGT CTGCCGCGCC AGTTTCATAC CATGGTCGTT
GAAAACGAGC GCCCGCAAGA TCTGCACACC GCGCGCTGGC TCTTTCCCGT TTATCTTCTC
TTAATGAGCC TGTTTGTGTT GCCGATTGCT TGGACGGGAC AAGGTTTACT GCCAAACACC
TCACCCGATA CGTTTGTGAT TAGCCTACCT GTGTTTGCTG GGGCTCACGA TATAGCATTG
TTGGCTTTTT TGGGCGGAAC ATCGGCAGCT TCGGGGATGG TGATTGTCTC GACCATTGCC
CTTGCGATCA TGGTATCCAA TGATTTAGTG ATGCCTTTAC TACTACGCCG GATGCGCTTG
TCGCAGCGCA CTCATCGACA TTTTTCCGGT TTGTTGGTGG TGATCCGCCG CACCTTAATC
CTACTTTTGC TGTTCGGTGC ATGGGGTTTT TATCTGGTAC TCGACAGCAT TCCTTCGTTA
TCGGCGATTG GGTTTCTATC GTTTTCAGCG ATTACCCAGT TTGCCCCTGC GATTTTTGGC
GGTATGTACT GGCGAGAAGG CAATCGTAAA GGGGTTTATG TTGGTTTAGC GGTCGGTTTT
ACCCTGTGGC TTATCACCTT GATGAGTGCC ACCGATATGC TGGCGGGCGA TGCCAGCAAT
AACGTCTTGC TGTGGGTGAT CACTCCACCA GATTGGTTGG TGGCTCTAGG GTTAAAAAGT
GCGGATTGGG GCATGCTACT GAGCGTGACC CTTAATACCT TGTGCTATAT CGGTGTGTCT
TTGGTGACGC GCGCCAGCTT AAGTGAGCGT TTGCAAGCCG CGGCGTTTGT CGGTACTCCG
CTGCCCGAAA ACGAAAACAT GAGCCTTTAC CAAAGTCGCG TGACTGTGGG TGAGCTTGAA
ATGTTGGCCT CACGTTTTGT GGGGCGGACT CGGGTACGCA ACGCCTTTGC TCAATACTGG
AGTCAGCAGC GTGAAACCTT GCTACCGAAT CAGCAAGCCT CTTCCGCCTT GATCCGCCAT
ACCGAACGCG TACTGGCTGG GGTATTTGGT GCTTCGTCCG CTAAGTTGGT GCTCACCTCG
GCGCTGCAAG GACGTAAAAT GCAGCTTGAG GAAGTGGCGA CCATAGTCGA TGAGGCGTCC
GAGCTGTACG ATTTCAGCCG CGGCTTGTTG CAAGGGGCGA TTGAACACAT CGGCCAAGGT
ATTGCCGTGG TGGATAAACA GTTACGTTTA GTGGCATGGA ACCAGCGCTA TCTTGAGCTG
TTTGAGTTTC CGCCGGGATT GATTCAAGTG GGACGGCCGA TTGCGGATGT GATCCGCCAT
AACGCGCAGC AAGGTTTATG TGGGCCGGGC GATCCAGAAG ATCACGTACG GCGACGGGTC
TACCACTTAG AGCAAGGGAC AAGTCATACC TCCTCGCGAG TGCGGGCGGA TGGGCGAGTG
ATTGAGGTGC AGGGGAACCA GATGCCCGGC GGTGGATTTG TGATGAGCTT TACTGACATT
ACGGTGTTTA GAGAAGCGGA ACAAAGCCTG AAAATGGCCA ACGAAACGCT AGAAGAGCGT
GTACTGCAGC GTACCTTGGA GCTAGAAAAG CTCAATAAAC AGTTAGTCAC CGCGACCCAG
CGTTCGGAGC GCGAGTCGCA ATCCAAATCG CGCTTTTTGG CGGCGGTCAG CCATGATTTG
ATGCAGCCAT TGAATGCCGC ACGCCTGTTT GCCTCATCTT TATCTGAAGT GGCTAAAGAG
GCGGAGGTGC AGAAACTTGC CCACCATATT GAAAGTGCTT TGGGCGCGGC GGAGGATTTG
ATCAGCGATT TGCTGGATAT TTCGCGTTTG GAGTCCGGCA AAATCGATCT GCATCCGCAC
AGTTTTGCGA TTATGGATGT ATTGTCGAAT CTCAATGCCG AGTTCAGTGC CCTCGCCGCT
AAACAAGGTG TGCAATTTAG CCTAGTGCCA TCATTACTTT GGGTGCATTC AGATCCCAAA
TTGCTGCGCC GAGTAATCCA AAATTTCCTG ACTAATGCGT TTCGTTATAA CCCGAACGGC
AAAGTGATTC TCGGGGTGCG CAGAGTCGCC ACCGGGCAAG TGCGTATTGA TGTGTGGGAT
AATGGGATTG GTATTGAGCA AGATAAGCAG CAGGAAATTT TTGAGGAGTT TAACCGCGGT
GGGCAGGTAC GCTCCGACCA AGGTCTAGGG CTTGGGCTGG CGATTTCGAA AGGGATTGCC
CATGTACTGG GTCATCACAT TTCGATGCGC TCTTGGCCGG GGCAGGGCAG TGTTTTCTCG
ATTACTTTAG ATCGCGCTCA ACCCATGCCG TCGTCACTCA CTCAGACGGT TGCGATGGTC
AATGAGAAAG GTTCAGAGCT GCAACATCTG CGTGTGCTGT GTGTCGATAA CGAGCCAGAT
ATTTTGGTTG GGATGCGTGA TTTGCTGGAG CGTTGGGGGT GTGAAGTCAA AACCGCGACC
GATATTCATG GCAGCCTCAA AGCCTTGGAA GGGCAATGGA TCCCCGATGT GATTTTGTCT
GATTACCGCT TGGATAACGG ACGGACAGGG CTTGAAGTGC TGCAGCAGTG CCGCTTGCGT
TTGGGGGATT GTTTCGCTGG CGTGATCATC AGTGCCGATC GCAATCCCGA TATCTTGGAT
GGGATTGAAT CAAGCGGTTT TCGCTTTATG GCTAAACCCA TTAAGCCCCT CAAACTGAGA
GCCTTACTGA ATAGTCTGTC TTGA
 
Protein sequence
MQGWLVIPVS LAYLGVLFLI AWYGDRQTRW LANWRPWIYS LSIAVYCTSW TFYGTVGQAS 
VNPWSFLPIY IAPILMFVFG WRVLARLILI AKREHITSLA DFIAARYGKS QGLAVAVTVI
AVLGILPYIA LQLRGITMGL NIVAPDLMTV YGYQESHVSW FVVLALALFT MLFGTRHIDN
TEHHRGMMMA IAFESIVKLV AFLCVGVFIA YLAWRTDGLE LSTIAASTYQ APNWPTLLIH
TLLTMIAIVC LPRQFHTMVV ENERPQDLHT ARWLFPVYLL LMSLFVLPIA WTGQGLLPNT
SPDTFVISLP VFAGAHDIAL LAFLGGTSAA SGMVIVSTIA LAIMVSNDLV MPLLLRRMRL
SQRTHRHFSG LLVVIRRTLI LLLLFGAWGF YLVLDSIPSL SAIGFLSFSA ITQFAPAIFG
GMYWREGNRK GVYVGLAVGF TLWLITLMSA TDMLAGDASN NVLLWVITPP DWLVALGLKS
ADWGMLLSVT LNTLCYIGVS LVTRASLSER LQAAAFVGTP LPENENMSLY QSRVTVGELE
MLASRFVGRT RVRNAFAQYW SQQRETLLPN QQASSALIRH TERVLAGVFG ASSAKLVLTS
ALQGRKMQLE EVATIVDEAS ELYDFSRGLL QGAIEHIGQG IAVVDKQLRL VAWNQRYLEL
FEFPPGLIQV GRPIADVIRH NAQQGLCGPG DPEDHVRRRV YHLEQGTSHT SSRVRADGRV
IEVQGNQMPG GGFVMSFTDI TVFREAEQSL KMANETLEER VLQRTLELEK LNKQLVTATQ
RSERESQSKS RFLAAVSHDL MQPLNAARLF ASSLSEVAKE AEVQKLAHHI ESALGAAEDL
ISDLLDISRL ESGKIDLHPH SFAIMDVLSN LNAEFSALAA KQGVQFSLVP SLLWVHSDPK
LLRRVIQNFL TNAFRYNPNG KVILGVRRVA TGQVRIDVWD NGIGIEQDKQ QEIFEEFNRG
GQVRSDQGLG LGLAISKGIA HVLGHHISMR SWPGQGSVFS ITLDRAQPMP SSLTQTVAMV
NEKGSELQHL RVLCVDNEPD ILVGMRDLLE RWGCEVKTAT DIHGSLKALE GQWIPDVILS
DYRLDNGRTG LEVLQQCRLR LGDCFAGVII SADRNPDILD GIESSGFRFM AKPIKPLKLR
ALLNSLS