| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2671 |
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| Symbol | cse |
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| ID | 5135517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2830389 |
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| End bp | 2831912 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640534119 |
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| Product | CRISPR-associated protein, Cse1 family |
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| Protein accession | YP_001218549 |
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| Protein GI | 147673815 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02547] CRISPR system CASCADE complex protein CasA/Cse1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 47 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAATT GCTTTAATTT GATTGATGAG CCCTGGATAC CAGTTACAAA TGCTGGGCTG
GTGAGTTTGC GTGAGATTTT TCTAAACAAC GCTCTACGTT CTTTGGGGGG GAATCCCGTG
CAAAAAATAG CGCTGACTAA ATTGTTGTTG GCGATTGCTC AATCTGCGGC TACGCCAGAA
GATGATGAAG ATTGGCGACG TATGGGCTAT TTAGGTATGG CGGATAAGTG CCTGAGCTAT
TTAGACCAGT GGCATAACCG ATTTTACTTG TACGGCAATA TGCCATTTTT ACAGATGCCT
GCCATCCAGA GTGCGGAGGT AAAATCTTTT GGTGTGCTCT CACCTGAGGT CAGCACAGGC
AATACTACGG TTCTCACCGA GTCTCAACAA GAGCAGGCCC ATAGTGATGC GGATAAAGCC
CTTTTGCTTG TCGTGCAGAT GGCTTTTGGA TTGAGTGGTA AGAAAACCGA TAACTCAGTG
GTCTTATCTC CCGGTTATCA AGGGAAATAC AATGACAAAG GTAAAGCGGC AAGTGGTAAA
GCCGGATCTG CCGTTGGTCA TATGGGGTTG TTGCACTCTT TTTGGTTAGC CGAATCGGTG
GTTGAGAGCC TTTGGCTCAA TCTTTTGACT CAAGAAGACA TTGGCGATTT GCCGATGTAT
TCCATTCTAG GTACAGCTCC GTGGGAACTG ATGCCAAGTG GAGAAGCGGA TTCTGTAGCC
GAGGCCTTAA AAACGTCGCT GATGGGTCGG CTTGTGCCAT TAGGTAAGTT CTGTTTGCTG
ACAGATAACG GTATTCACTA CTCCGATGGT ATCGCACATC CGAGCTACCT AGAGGGTAAA
GCCGATCCTA GCGCATCGGT CGACTTCTCC CAAAAGAAAC TGAAGGCATT GTGGGTCAAT
CCTGATAAAA GACCATGGCG AGAACTGACC GCTTTGTTGC AGTTTATCGA AAGCGGAAAA
AGCATTGGTT ATGAGACGCC GCAATTGGCA CGAACCATCA GGCGAGTCAA ATATGGGGTT
GAGAGTTTTG CCATCTGGTC GGGTGGGCTG CGAGTGAGCA GTAATGCCGG TGAACAATAT
GCATCCGGCA CCGATGATTA TGTTCAGTCA GAGTTTTGGT TACTGTCGAG TGAATTAGGC
GATTCTTTCC TTGCCCAACT CAAACAGGAA ATGTCGGAGC TTAGTGCACT TCAAAAAACC
TTATGGGGTG CTGTCGTCCG TTATTTTAGA CAGCTTTCTG ATATAGACAA AAGCAGTGCA
GGGAAAGCAC AGCCTTTTGT GGCGAATCAA GCAGAGCGAG CTACCCATTT ATTTTGGCAG
TTGTGTGAGA GACAGGCGCA AGCCTTGTTA GATGCTTGCA ACGATGACAT CGATGCCAAA
ATTGAACGCC AACGTCTACG AAAGATCTTC GCTGGATATG CCTTGCGAGT CTTTGACCAA
GTATGCCCGA ACGACAGCAC CCGGCAGTTA GATGCTTGGG CTCAGTTTCG GCCAAATTAT
CATCAATACC TCAACGTCGA ATAA
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| Protein sequence | MENCFNLIDE PWIPVTNAGL VSLREIFLNN ALRSLGGNPV QKIALTKLLL AIAQSAATPE
DDEDWRRMGY LGMADKCLSY LDQWHNRFYL YGNMPFLQMP AIQSAEVKSF GVLSPEVSTG
NTTVLTESQQ EQAHSDADKA LLLVVQMAFG LSGKKTDNSV VLSPGYQGKY NDKGKAASGK
AGSAVGHMGL LHSFWLAESV VESLWLNLLT QEDIGDLPMY SILGTAPWEL MPSGEADSVA
EALKTSLMGR LVPLGKFCLL TDNGIHYSDG IAHPSYLEGK ADPSASVDFS QKKLKALWVN
PDKRPWRELT ALLQFIESGK SIGYETPQLA RTIRRVKYGV ESFAIWSGGL RVSSNAGEQY
ASGTDDYVQS EFWLLSSELG DSFLAQLKQE MSELSALQKT LWGAVVRYFR QLSDIDKSSA
GKAQPFVANQ AERATHLFWQ LCERQAQALL DACNDDIDAK IERQRLRKIF AGYALRVFDQ
VCPNDSTRQL DAWAQFRPNY HQYLNVE
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