Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2670 |
Symbol | cas |
ID | 5137344 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 2827873 |
End bp | 2830386 |
Gene Length | 2514 bp |
Protein Length | 837 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640534118 |
Product | CRISPR-associated helicase Cas3 domain-containing protein |
Protein accession | YP_001218548 |
Protein GI | 147673323 |
COG category | [R] General function prediction only |
COG ID | [COG1203] Predicted helicases |
TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATTCCTG GACGTAATGT CCCTGAACAT TGCCAAATTG TTGGTGAAAT TGCCAAAGTG CTGATTCAAC GATTTCCTCC CGCAATACAG AGAATCTTAT TTCCTGTTGG GAGTGAGTTG GCTGCAGCTT GCCATGATAT TGGCAAAGTC AGCCCAACGT TTGTTGCCAA GATTTTTAAA GCGTGTGGAA TCGATACTCA AACGCTACCC GCTTTAGCTA ATGTGAATCC GTCTCTGGAA TCGCAATGGG GTGGCCATGC AGGTGTAAGC CAAGCGACCG CAGAAGAAAT CATGGCGCCC AAGTACGTTG CGCATATCCT TGGACAACAT CATGGCTTTA GCCCAAGTGG TGTTGATGAT AAGCGAGGAA ATGCGGCGGT ATTTGGCGGA GAGTCGTGGT TTGAGGAACG CCGTAAACTG GTGAACCATC TAAAGGAAGT ATTGAACACG GAGTGGCCTA AATTTGAGCG AGCAGAACAA GCTAGAGTTG TTGCTGGTTT AACCTCTGTT GCGGATTGGA TTGGCTCCGG CAGCTTTTTT GAAGATCCCA CTCAAGCATG GAAACCTAAT GTTATTAAAG CGCTAAATTG TGCTGGTTTC ATAACGCCCT CAATTATCAA AGACATGTCT TTTACTGATA TTTTCGATCC AGCTAAACGT AACATGAAAC CCAGAGAGGC CCAGATTCAG TTTGTCAATC AGGTTACAGG TCCTGGTGTG TATGTGCTTG AAGCGCAGAT GGGAATGGGA AAAACTGAGG CTGCACTCTA CGCCGCCTAT CGATTGCTTG CTGAAGCCAA AGCCACTGGG ATTTATTTTG CGCTACCGAC ACAACTGACC TCTAATAAAA TTTATGACCG TTTTAATTCA TTTCTAGAAC AAATTATCGC GGCTGAAACA CCGAACCGTG CAATGTTACT TCACTCTGGT GCATGGTTGC TGAAACAAGC AGATATGGGT GAAGAGGGCA GTCCAGGTGG CGCTTGGTTT AATCACAACA AGAGAGGTCT TTTAGCGCCT TTTGCTGTTG GGACTATTGA TCAGGCGCTA ATGGCCGTGA TGAATGTAAA ACATGGTTTT GTGAGAGCTT TTGGGCTCGC TGGCAAGGTG GTGATCCTTG ATGAAGTCCA TAGCTATGAT CTCTACACAG GCACCATCTT AAATGAGCTG GTGGCGTTTC TTCGGCAAAT TGGCTGTACC GTCATTATAT TAAGTGCCAC GTTGAGCCCT GCTCGCCGTC ACTCCCTACT ACAACAACGC ACTTCCAGTT CTGAGTATCC ATTAATTACC GCATTGCATA ATGACAGGGA TTCTCCCAGC GAAGTTGCTA TTCCCTGCGT CGATGGCGCA AAGGTGGAAC TGACACATTG CTCCAACGAC TTGCAAGCTA TCGAAGAGGC GATAAACCGT GCAGCTATGG GGCAACAAGT ATTGTGGATT GAGAATACCG TGGCAGATGC CCAACAGCGC TATTTAGATA TGGCGAGCAG AGGCGTGGGT TTAGGCTGTG AAGTGGGATT ATTGCATTCA AGATTTACTC CGCAAGATAG AGAGAAGAAT GAACAGCACT GGGTGAGTCT CTTTGGTAAA GCGGGTTGGT CGCAGCGTCG GCAATGTGGT CGTATCTTAA TTGGAACTCA AGTTCTCGAA CAATCGATTG ACATAGATGC TGATTTTTTG ATTACCCAAT TTGCTCCGAC CGATATGTTG TTGCAGCGAA TTGGTCGGTT ATGGCGTCAT CTTGATGCTC CTAGAGCGAC ATCAGCACGT TGTGAGTGTT GGTTGTTGGC TCCCAACCTA GAACAAGCAC TGAGTTCGCC CTCTTCTGCC TTTGGTCTTA GTGCTATGGT CTATTCGCCC TATGTGTTGT GCCGCAGTTT GGAAGTATGG CTTGGTCTAT CTCACCTTGC GCTGCCTTCC AGCATCCGCC CACTGATTGA TCAAACCTAC TGCGAGCGTG ATGAGTCAGC ACAGTGGGCA TTTTTACTCC ACCAGCTCAA AGCAGGCTCA CGGTATAAAA CAGGTGAAAA AGCGCTGCAA GCATTAGCCA AAATCACCTT AGCAAAGGCG GGAAAAACCT TACCCGAACA TAAAGCCGAT ACCCGCTATA GCGATCAAGA TACTTATGAA GTATTGCTTC TACGAGCTAT TCGCACTAGT GAGGGTCATA CCTACATACG ATTGTTGGAT AACCGTGAAT TGATCTTGCC GCATGCTCGC TACCAATTAA GCAAAGCACA ATGGCGAGAA CTGGCTGTTG AGCTTCACCA GTCTCTGGTC AAAGTGAGCC CCAAAAATTG TCCAGACAAA ATATCCAAAC ACCAACTTGA GCAACTGCAT TTACATCATG TTTTTTATCT CGGTAATCCG GAGGAAGATG AGGCGTTACT CAGAATTGCT TTAGTTAGCC CCGTAGGGGA GTTGCTAACG TTGGATGGGC GCAGAGCCAG CGACAAATAT CAGTTGGAAT ACCGACACGA TCTGGGCTAC CGAGTCATTG TACAAAAGGA ATAA
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Protein sequence | MIPGRNVPEH CQIVGEIAKV LIQRFPPAIQ RILFPVGSEL AAACHDIGKV SPTFVAKIFK ACGIDTQTLP ALANVNPSLE SQWGGHAGVS QATAEEIMAP KYVAHILGQH HGFSPSGVDD KRGNAAVFGG ESWFEERRKL VNHLKEVLNT EWPKFERAEQ ARVVAGLTSV ADWIGSGSFF EDPTQAWKPN VIKALNCAGF ITPSIIKDMS FTDIFDPAKR NMKPREAQIQ FVNQVTGPGV YVLEAQMGMG KTEAALYAAY RLLAEAKATG IYFALPTQLT SNKIYDRFNS FLEQIIAAET PNRAMLLHSG AWLLKQADMG EEGSPGGAWF NHNKRGLLAP FAVGTIDQAL MAVMNVKHGF VRAFGLAGKV VILDEVHSYD LYTGTILNEL VAFLRQIGCT VIILSATLSP ARRHSLLQQR TSSSEYPLIT ALHNDRDSPS EVAIPCVDGA KVELTHCSND LQAIEEAINR AAMGQQVLWI ENTVADAQQR YLDMASRGVG LGCEVGLLHS RFTPQDREKN EQHWVSLFGK AGWSQRRQCG RILIGTQVLE QSIDIDADFL ITQFAPTDML LQRIGRLWRH LDAPRATSAR CECWLLAPNL EQALSSPSSA FGLSAMVYSP YVLCRSLEVW LGLSHLALPS SIRPLIDQTY CERDESAQWA FLLHQLKAGS RYKTGEKALQ ALAKITLAKA GKTLPEHKAD TRYSDQDTYE VLLLRAIRTS EGHTYIRLLD NRELILPHAR YQLSKAQWRE LAVELHQSLV KVSPKNCPDK ISKHQLEQLH LHHVFYLGNP EEDEALLRIA LVSPVGELLT LDGRRASDKY QLEYRHDLGY RVIVQKE
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