| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2627 |
|---|
| Symbol | rfbI |
|---|
| ID | 5135325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 2780054 |
|---|
| End bp | 2780869 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640534076 |
|---|
| Product | lipopolysaccharide/O-antigen transport protein |
|---|
| Protein accession | YP_001218506 |
|---|
| Protein GI | 147674780 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGTATGGT CAGCTACTTC TCGTACAAAG TACTCGATAA AAAAGTCATT TTTTGGGTGT
AGTATGATAG AGCTATCTAA TGTTAATTTG CACTACCCTG TGCCAGGGCA TTTCTCACAT
TCTTTGCAAA CAACAATATC CAGCAAAATT GGTGGTGTAC TGGGTTCTAG TTCTGCAAAA
GATAAAGAAA TGAAGTATGT TCATGCACTA AGAGATATTA ATCTAAAGCT AGAAGATAGC
AGTAGGTTGG GTATTATTGG GCATAATGGT GCTGGCAAAA CGACTCTACT TAGGTTACTT
TCTCAGGTTT ATCCACCAAC GTCAGGAAAG GTTACTATCG AAGGAAAGAT TTCAGCATTG
ACTGACTTCA CTCTTGGAAT GGATCCCAAT GCAACAGGTC TAAAGAATAT CGAATTTAGA
TTAGTATTTA TGGGATGTAC ATTTAAGGAA GCGCAACAAG CAGTTGAAGA AATCGTTGCT
TTTTCAGAAC TCGGCGAATT TATCAATCTA CCAGTCAGAA CTTATTCTAC CGGTATGTTC
TTACGTTTGG CTTTTGCAAT TTCTACACAT TTCACTCCGG ATATATTGAT TTTAGATGAA
GTTATTGGGG CTGGTGATGA AACTTTCCGT GAGAAAGCAT TATCACGTTT GGAAAGTCTG
ATCAAGAAGT CAAGAATGGT TGTTTTGTCT TCTCATGATT TAAATGCTAT TAAACAATAT
TGTGATCAGG CTATTGTAAT GGAGAAAGGT GAATTTGTTT TCAATGGAAC ACCACAATCA
TGCATTGACT ACTATTTAAA CAGTGTCAAA AAATAA
|
|---|
| Protein sequence | MVWSATSRTK YSIKKSFFGC SMIELSNVNL HYPVPGHFSH SLQTTISSKI GGVLGSSSAK
DKEMKYVHAL RDINLKLEDS SRLGIIGHNG AGKTTLLRLL SQVYPPTSGK VTIEGKISAL
TDFTLGMDPN ATGLKNIEFR LVFMGCTFKE AQQAVEEIVA FSELGEFINL PVRTYSTGMF
LRLAFAISTH FTPDILILDE VIGAGDETFR EKALSRLESL IKKSRMVVLS SHDLNAIKQY
CDQAIVMEKG EFVFNGTPQS CIDYYLNSVK K
|
|---|
| |