Gene VC0395_A2623 details

Gene Information

• Locus tag: VC0395_A2623
• Symbol: gmd
• ID: 5136037
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 2775726
• End bp: 2776847
• Gene Length: 1122 bp
• Protein Length: 373 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 640534072
• Product: GDP-mannose 4,6-dehydratase
• Protein accession: YP_001218502
• Protein GI: 147674729
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1089] GDP-D-mannose dehydratase
• TIGRFAM ID: [TIGR01472] GDP-mannose 4,6-dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAAAA AAGTTGCGTT AATCACAGGC ATTACTGGAC AAGATGGTTC TTATCTAGCG 
GAGTTTTTGC TAGAAAAAGG GTATGAAGTA CATGGAATTA AAAGACGTTC ATCTTTATTC 
AATACACAAC GTGTTGATCA TCTTTACAAA GACCCACATG AGGAAGATGT AAATTTCAAA 
CTACATTACG GAGACCTTAC GGATTCCTCT AACTTGACTC GTATATTAGC GGAAGTACAG 
CCAGATGAAG TCTATAACTT GGGCGCGCAG TCCCATGTGG CGGTTAGTTT CCAGTCACCG 
GAATATACAG CGGACGTAGA TGCTATTGGA ACTTTAAGGC TACTAGAAGC AATCAGATTT 
TTAGGTTTGA CGAAAAAAAC TAAGTTTTAT CAAGCCTCAA CTTCAGAGCT TTATGGCTTA 
GTACAAGAAA TACCTCAGAA AGAAACTACC CCTTTTTATC CTAGAAGCCC TTATGCTGTG 
GCAAAGATGT ATGCGTATTG GATAACAATT AATTATAGAG AATCGTACGG AATATACGCG 
TGTAATGGCA TACTTTTTAA CCACGAATCC CCTAGACGAG GAGAAACTTT TGTAACTCGC 
AAAATAACTC GGGGGATGGC AAACATTGCG CAAGGGTTAG AAAAATGCCT TTTTATGGGA 
AATTTGGACG CTCTTCGAGA TTGGGGGCAT GCTAAAGATT ACGTTAAGAT GCAATGGATG 
ATGTTACAGC AAGATGAACC TAGAGATTTT GTTATTGCTA CAGGTGTACA GTATAGCGTA 
AGAGAGTTTA TTGATATGTC AGCACGAGAA CTAGGCATTG AGTTAGAATT TGTCGGTAAG 
GGTGTAGATG AAAAAGCTGT AGTGAAGTCA GTTATTGGAA CGAAAGCTCC TGCAATCAAG 
GTTGGTGACA TTATTGTAGC TGTGGATCCT GCATATTTTA GACCCGCAGA GGTAGAAACG 
CTGTTAGGTG ATCCTAGCCT AGCTAAGAAG GAGCTTGGAT GGGTGCCAGA AATTACTTTA 
CAACAGATGG TTTCTGAAAT GGTAGCTTCT GATTTAGAAC AAGCTCAAAG TCATGCACTA 
TTGAAAAAAC ATGGCTATAA CGTAAATGTA TCTGTAGAGT GA 

 

Protein sequence

MNKKVALITG ITGQDGSYLA EFLLEKGYEV HGIKRRSSLF NTQRVDHLYK DPHEEDVNFK 
LHYGDLTDSS NLTRILAEVQ PDEVYNLGAQ SHVAVSFQSP EYTADVDAIG TLRLLEAIRF 
LGLTKKTKFY QASTSELYGL VQEIPQKETT PFYPRSPYAV AKMYAYWITI NYRESYGIYA 
CNGILFNHES PRRGETFVTR KITRGMANIA QGLEKCLFMG NLDALRDWGH AKDYVKMQWM 
MLQQDEPRDF VIATGVQYSV REFIDMSARE LGIELEFVGK GVDEKAVVKS VIGTKAPAIK 
VGDIIVAVDP AYFRPAEVET LLGDPSLAKK ELGWVPEITL QQMVSEMVAS DLEQAQSHAL 
LKKHGYNVNV SVE