| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2619 |
|---|
| Symbol | |
|---|
| ID | 5137868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 2769615 |
|---|
| End bp | 2771387 |
|---|
| Gene Length | 1773 bp |
|---|
| Protein Length | 590 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640534068 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001218498 |
|---|
| Protein GI | 147675347 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase
[COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTT TGATGGCCCT ATCCCAACTC GAAGTAACGG GAGCTGAGGT GTATGCCACT
AGTGTAGGTA ATGAGCTCAC TCGACGTGGC CATCAGGTAT TTTATGTTTC CGATACGCTC
ACCAAAGCTC ACGATGGCCT GTTTTTTAAA CTGCGCTTTA ATAAACGCAG CATCCCGCGG
CGCTTTTGGC ATGTCGCCTA TCTGGTTTAC CTGATCAAGA AACATCAGAT CCAGTTAGTC
CATGCTCACT CACGAGCATC AAGCTGGAGT TGCCATATTG CCTGCCGCTT GACTAATACC
CCTATGGTTA CCACGGTCCA TGGTCGTCAA CCGGTACATG TTTCGCGCAA AAAATTCCAT
GCAATGGGAG ATAAAGCGCT TCCGGTTTGT GAAGCGATAC GAGAGCAATT AATCAAAGAT
CTCAATGTAC CGGAGAGCCA ACTGCACGTA AGCCGTAATG GGATAGAAAC AAGTATCTTT
AAACGCAGCG CAGCACCCAA TAATCCTAAG CCAGTTATCT CTATCATTGG CCGACTCAGT
GGCCCTAAAG GTGAACTTTG CTATAGGTTG CTAACCGAGT GTTTAGACCT CGACCGCTAC
CAAGTACAAG TGATCACAGG TACACCGTTA ACTGAGCGTT TTAGCGCACT GCAAGATAAA
GTCTCATTTC CCGGCTACAG CGCCAACGTT GAACAGATCA TGGCTCAATC AGATTTGGTG
ATTGGTGCAG GACGAGTCGC GATGGAGGCA CTCCTATGTG GCCGCCCGAC CCTTGCGATT
GGTGAAGCAA GCTGCGTGGG GATTATCGAA CTGGATAATC TAAACCAAGC CATGGCAACC
AATTTTGGCG ACATCGGTCC ACACGATCTG GCGATAGATT TCCAGCAAAT CCCCGCTTTG
ATTGAGCAAG GCCTAAGTCA ACCGCACTGC ACTCAAGAGA TCACTGAACA GATCAAGCTT
AACTATGATT TACAAGTGAT TGTGAATGAG CTTGAAAACC TTTATCAAAC GTTTTATGTC
AACAAGTTAC AACGAGAAGT CCCCATCATC ATGTACCACC GCTTTATTCG TGATGACAGC
GAAAAAGGTG TACATGGTAC TTATTTGCAT GTTCAGCAGC TTGAGAAACA TTTTCAGTTG
CTTAAAAAGA TGGGCTTTGA AACTCTGACC TTCAAAGATC TCTCTGAGAA GGGATTTATT
CATCGCTTAC AACCAGGTAA GCGTTTTATC ATAATTACCG TGGATGATGG CTATCGCGAC
AACTATGACT TGTTACTGCC ACTGCTCAAA AAGTATCAAT TTAAAGCCGT GGTGTATGTG
GTGACTGGCG AGAATTTTAA TCGCTGGGAT GTCGAAGTGA GTGACAACCC TGAAAAAGTG
GTCCCTTTGA TGTCACCGGA GCAAGTTAAA GCGTTACATG ACTCTGGATT AGTAGAGATT
GGTGGTCATA CGATGACTCA TCCCTTTTTG AGTAAGCTCA GTGAATCGGA ACAACGCGAA
GAAATATTGC GCAACAAACT CGAACTTGAA GCGCTAATCG GAGAGCCACT GACCTCCTTT
GCTTATCCTT ATGGTGACCA TGATGCAACC TCTAAACAAC TGGCTCAGGA TCTGGGTTAC
CCATTTGCCG TAGCGACCAA CAGTGGTCCA CTTTTGATGC ATCAAGATCC CTATCAAATT
CGTCGGATTG CGATTTTTCC AAGAACCGAC ACTTTTGGTC TGTGGCGAAA AGTGAAAGGG
AATTATCTAT TTAGAAAAAT GAACAAAAAA TAA
|
|---|
| Protein sequence | MNILMALSQL EVTGAEVYAT SVGNELTRRG HQVFYVSDTL TKAHDGLFFK LRFNKRSIPR
RFWHVAYLVY LIKKHQIQLV HAHSRASSWS CHIACRLTNT PMVTTVHGRQ PVHVSRKKFH
AMGDKALPVC EAIREQLIKD LNVPESQLHV SRNGIETSIF KRSAAPNNPK PVISIIGRLS
GPKGELCYRL LTECLDLDRY QVQVITGTPL TERFSALQDK VSFPGYSANV EQIMAQSDLV
IGAGRVAMEA LLCGRPTLAI GEASCVGIIE LDNLNQAMAT NFGDIGPHDL AIDFQQIPAL
IEQGLSQPHC TQEITEQIKL NYDLQVIVNE LENLYQTFYV NKLQREVPII MYHRFIRDDS
EKGVHGTYLH VQQLEKHFQL LKKMGFETLT FKDLSEKGFI HRLQPGKRFI IITVDDGYRD
NYDLLLPLLK KYQFKAVVYV VTGENFNRWD VEVSDNPEKV VPLMSPEQVK ALHDSGLVEI
GGHTMTHPFL SKLSESEQRE EILRNKLELE ALIGEPLTSF AYPYGDHDAT SKQLAQDLGY
PFAVATNSGP LLMHQDPYQI RRIAIFPRTD TFGLWRKVKG NYLFRKMNKK
|
|---|
| |