Gene VC0395_A2593 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2593 
SymbolslmA 
ID5136292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand- 
Start bp2747741 
End bp2748373 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content48% 
IMG OID640534042 
Productnucleoid occlusion protein 
Protein accessionYP_001218472 
Protein GI147674218 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.000323733 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTTGTTCA TCAGCAGTGA TAACCAAAAG GAAAAACGGG GCATGGCCGG CAATAAAAAA 
ATCAATCGAC GCGAAGAAAT CCTGCAAGCT CTAGCCGAGA TGCTTGAATC CAATGAAGGG 
GCTTCACGCA TCACTACCGC AAAACTCGCT AAGCAAGTTG GCGTGTCCGA AGCCGCGCTG 
TATCGCCATT TCCCGAGCAA AGCTCGTATG TTTGAAGGCT TGATTGAGTT TATTGAAGAA 
TCCTTGATGT CGCGTATCAA CCGCATCTTT GATGAAGAAA AAGACACGCT CAATCGCATT 
CGTTTGGTGA TGCAACTGCT GCTTGCCTTT GCCGAACGTA ACCCGGGCTT GACACGCATT 
CTCTCAGGAC ATGCTTTAAT GTTTGAAAAT GAGCGCTTGC GCGATCGCAT CAATCAGTTG 
TTTGAACGGA TTGAAACCTC TTTGCGCCAA ATTCTGCGTG AACGTAAACT CCGCGAAGGC 
AAATCCTTCC CGGTGGATGA AAATATCCTC GCCGCGCAGC TGCTCGGTCA GGTGGAAGGC 
AGCTTGAATC GCTTTGTGCG TTCTGATTTC AAATACCTGC CAACCGCGAA TTTTGATGAA 
TACTGGGCGC TGCTAAGTGC ACAGATTAAG TGA
 
Protein sequence
MLFISSDNQK EKRGMAGNKK INRREEILQA LAEMLESNEG ASRITTAKLA KQVGVSEAAL 
YRHFPSKARM FEGLIEFIEE SLMSRINRIF DEEKDTLNRI RLVMQLLLAF AERNPGLTRI 
LSGHALMFEN ERLRDRINQL FERIETSLRQ ILRERKLREG KSFPVDENIL AAQLLGQVEG 
SLNRFVRSDF KYLPTANFDE YWALLSAQIK